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LOCUS EU380752 1302 bp RNA linear VRL 31-JAN-2009
DEFINITION HIV-1 isolate 402787T from Uganda pol protein (pol) gene, partial
cds
ACCESSION EU380752
VERSION EU380752.1 GI:170294136
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Analysis of nevirapine (NVP) resistance in Ugandan infants who were
HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
plus daily NVP up to 6 weeks of age to prevent HIV vertical
transmission.
JOURNAL J. Infect. Dis.. 198(7); 1075-82 (2008)
PUBMED 18684096
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT Ugandan
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="402787T"
/db_xref="taxon:11676"
/country="Uganda"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACB13154.1"
/db_xref="GI:170294137"
/translation="PQITLWQRPLVTVKIEGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQICVEICGHKATGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKIERIGPDNPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
MVIXQYMDDLYVGSDLEIKQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLKGAKTLTEVI
PLTTEAELELAENKEILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT 533 a 211 c 260 g 295 t 3 other
ORIGIN
1 cctcaaatca ctctttggca rcgacccctt gtcacagtaa aaatagaggg acaactaaag
61 gaagctctat tagatacagg agcagacgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat
181 caaatatgtg tagaaatctg tggacataaa gctacaggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag gaatttgttg actcagattg gttgcacttt aaattttccc
301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaagata aaagcactaa cagaaatttg tacagaaatg
421 gaaaaggaag gaaaaattga aaggattggg cctgataatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagactttag agaacttaat
541 aagagaactc aagacttttg ggaagtccaa ctaggaatac cacatcctgc agggctaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccaggr
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcaa
781 agtagcatga caaaaatctt agaacccttt agaaaacaaa atccagaaat ggttatctrt
841 caatacatgg atgacttgta tgtaggatca gacttagaaa taaagcagca tagagcaaaa
901 atagaggaat taagggaaca tctattgagg tgggggttca ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg
1081 gggaaattaa attgggcaag ccagatttat ccaggaatta aagtaaaaca attatgtaaa
1141 ctccttaagg gagccaaaac attgacagaa gtaataccac taacaacaga agcagaatta
1201 gaattggcag aaaacaagga aatcctaaaa gaaccagtac atggagtgta ttatgaccct
1261 tcaaaagact taatagcaga aatacaaaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022