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LOCUS	    EU380752		    1302 bp    RNA     linear	VRL 31-JAN-2009
DEFINITION  HIV-1 isolate 402787T from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU380752
VERSION     EU380752.1 GI:170294136
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Analysis of nevirapine (NVP) resistance in Ugandan infants who were
	    HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
	    plus daily NVP up to 6 weeks of age to prevent HIV vertical
	    transmission.
  JOURNAL   J. Infect. Dis.. 198(7); 1075-82 (2008)
  PUBMED    18684096
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT     Ugandan
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="402787T"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACB13154.1"
		     /db_xref="GI:170294137"
		     /translation="PQITLWQRPLVTVKIEGQLKEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQICVEICGHKATGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKIERIGPDNPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     MVIXQYMDDLYVGSDLEIKQHRAKIEELREHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKESWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLKGAKTLTEVI
		     PLTTEAELELAENKEILKEPVHGVYYDPSKDLIAEIQKQGQD"
BASE COUNT	533 a	 211 c	  260 g    295 t      3 other
ORIGIN
       1 cctcaaatca ctctttggca rcgacccctt gtcacagtaa aaatagaggg acaactaaag 
      61 gaagctctat tagatacagg agcagacgat acagtattag aagaaataaa tttgccagga 
     121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat 
     181 caaatatgtg tagaaatctg tggacataaa gctacaggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag gaatttgttg actcagattg gttgcacttt aaattttccc 
     301 atcagtccta ttgaaactgt accagtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaagata aaagcactaa cagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaattga aaggattggg cctgataatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaagtgg agaaaattag tagactttag agaacttaat 
     541 aagagaactc aagacttttg ggaagtccaa ctaggaatac cacatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat 
     661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccaggr 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcaa 
     781 agtagcatga caaaaatctt agaacccttt agaaaacaaa atccagaaat ggttatctrt 
     841 caatacatgg atgacttgta tgtaggatca gacttagaaa taaagcagca tagagcaaaa 
     901 atagaggaat taagggaaca tctattgagg tgggggttca ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa aactgccaga aaaagaaagc tggactgtca atgatataca gaagttagtg 
    1081 gggaaattaa attgggcaag ccagatttat ccaggaatta aagtaaaaca attatgtaaa 
    1141 ctccttaagg gagccaaaac attgacagaa gtaataccac taacaacaga agcagaatta 
    1201 gaattggcag aaaacaagga aatcctaaaa gaaccagtac atggagtgta ttatgaccct 
    1261 tcaaaagact taatagcaga aatacaaaaa caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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