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LOCUS	    EU380734		    1302 bp    RNA     linear	VRL 31-JAN-2009
DEFINITION  HIV-1 isolate 366975Y from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU380734
VERSION     EU380734.1 GI:170294100
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Analysis of nevirapine (NVP) resistance in Ugandan infants who were
	    HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
	    plus daily NVP up to 6 weeks of age to prevent HIV vertical
	    transmission.
  JOURNAL   J. Infect. Dis.. 198(7); 1075-82 (2008)
  PUBMED    18684096
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT     Ugandan
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="366975Y"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACB13136.1"
		     /db_xref="GI:170294101"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWRP
		     KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICGEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
		     IIIXQYMDDLYVXSDLEIGQHRAKVEELRAHLLNWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKDPVHGVYYDPSKELVAEIQKQGQD"
BASE COUNT	506 a	 207 c	  280 g    303 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acaactaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga 
     121 aaatggaggc caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat 
     181 cagatactca tagaaatttg tggaaagaag gctataggta cagtattagt aggacccaca 
     241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtactct aaattttcca 
     301 attagcccta ttgagactgt accagtaaca ttaaagccag gaatggatgg cccaaggatt 
     361 aaacaatggc ctttgacaga agaaaaaata aaagcattaa cagaaatttg tggagagatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataatac tccagtgttt 
     481 gctataaaga aaaaggatag cactaaatgg agaaaattag tagattttag agaactcaat 
     541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag 
     601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tccgttagat 
     661 gaaaacttta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccagga 
     721 atcaggtatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag 
     781 agtagcatga caaaaatctt agagcccttt agatcaaaaa ayccagaaat aatyatctrt 
     841 caatatatgg atgacttata tgtagsatct gatttagaaa tagggcagca tagagcaaaa 
     901 gtagaggagt tgagagctca tctattgaat tggggattta ctacaccaga taaraaacat 
     961 caaaaggagc ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctatac agctgccaga caaggacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaactaa attgggcaag tcaaatttat gcaggratta aagtaaagca actgtgtaaa 
    1141 ctcctcagag gagccaaagc attaacagat atagtaacac tgaccgagga ggctgaatta 
    1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca 
    1261 tcaaaggaat tagtagcaga aatacagaag caagggcaag ac
//
last modified: Tue May 31 10:56 2022


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