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LOCUS EU380734 1302 bp RNA linear VRL 31-JAN-2009
DEFINITION HIV-1 isolate 366975Y from Uganda pol protein (pol) gene, partial
cds
ACCESSION EU380734
VERSION EU380734.1 GI:170294100
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Analysis of nevirapine (NVP) resistance in Ugandan infants who were
HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
plus daily NVP up to 6 weeks of age to prevent HIV vertical
transmission.
JOURNAL J. Infect. Dis.. 198(7); 1075-82 (2008)
PUBMED 18684096
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT Ugandan
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="366975Y"
/db_xref="taxon:11676"
/country="Uganda"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACB13136.1"
/db_xref="GI:170294101"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDINLPGKWRP
KMIGGIGGFIKVKQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVTLKPGMDGPRIKQWPLTEEKIKALTEICGEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRSKNPE
IIIXQYMDDLYVXSDLEIGQHRAKVEELRAHLLNWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPDKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKDPVHGVYYDPSKELVAEIQKQGQD"
BASE COUNT 506 a 207 c 280 g 303 t 6 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acaactaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagatataaa tttgccagga
121 aaatggaggc caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtatgat
181 cagatactca tagaaatttg tggaaagaag gctataggta cagtattagt aggacccaca
241 cctgtcaaca taattggaag aaatatgttg actcagattg gttgtactct aaattttcca
301 attagcccta ttgagactgt accagtaaca ttaaagccag gaatggatgg cccaaggatt
361 aaacaatggc ctttgacaga agaaaaaata aaagcattaa cagaaatttg tggagagatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catataatac tccagtgttt
481 gctataaaga aaaaggatag cactaaatgg agaaaattag tagattttag agaactcaat
541 aaaagaactc aggatttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag
601 aagaaaaaat cagtaacagt actagatgtg ggggacgcat atttttcagt tccgttagat
661 gaaaacttta gaaaatatac tgcattcacc atacctagta taaacaatga gacaccagga
721 atcaggtatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agatcaaaaa ayccagaaat aatyatctrt
841 caatatatgg atgacttata tgtagsatct gatttagaaa tagggcagca tagagcaaaa
901 gtagaggagt tgagagctca tctattgaat tggggattta ctacaccaga taaraaacat
961 caaaaggagc ctccatttct ttggatgggg tatgaactcc atcctgacaa atggacagtc
1021 cagcctatac agctgccaga caaggacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaactaa attgggcaag tcaaatttat gcaggratta aagtaaagca actgtgtaaa
1141 ctcctcagag gagccaaagc attaacagat atagtaacac tgaccgagga ggctgaatta
1201 gaattggcag agaacaggga gattctaaaa gaccctgtgc atggagtata ttatgaccca
1261 tcaaaggaat tagtagcaga aatacagaag caagggcaag ac
//
last modified: Tue May 31 10:56 2022