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LOCUS EU380724 1302 bp RNA linear VRL 31-JAN-2009
DEFINITION HIV-1 isolate 347758P from Uganda pol protein (pol) gene, partial
cds
ACCESSION EU380724
VERSION EU380724.1 GI:170294080
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1302)
Show all sequences for reference 1
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Analysis of nevirapine (NVP) resistance in Ugandan infants who were
HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
plus daily NVP up to 6 weeks of age to prevent HIV vertical
transmission.
JOURNAL J. Infect. Dis.. 198(7); 1075-82 (2008)
PUBMED 18684096
REFERENCE 2 (bases 1 to 1302)
Show all sequences for reference 2
AUTHORS Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
TITLE Direct Submission
JOURNAL Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT Ugandan
FEATURES Location/Qualifiers
source 1..1302
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="347758P"
/db_xref="taxon:11676"
/country="Uganda"
gene <1..>1302
/gene="pol"
CDS <1..>1302
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACB13126.1"
/db_xref="GI:170294081"
/translation="PQITLWQRPLVTVKIEGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVKQYDQITVEICGKKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLNVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYPGIRVRHLCKCIRGTRALTEVV
SLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT 533 a 209 c 265 g 295 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaatagaagg acagctaaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaagc caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtacgat
181 cagataactg tagaaatttg tgggaaaaaa gctataggta cagtattagt gggacctaca
241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca
301 attagtccta ttgaaactgt accggtaaaa ttaaagccag ggatggatgg cccaaaagtt
361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaagatcggg cctgaaaatc catacaacac tccaatattt
481 gctataaaga aaaaagacag tactaagtgg agaaagttag tagattttag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggctaaaa
601 aagaaaaaat cagtaacagt actggatgta ggtgatgcat atttttcagt tcccttagat
661 aaagacttta gaaaatatac cgcattcacc atacccagta taaacaatga gacaccagga
721 gttagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat agttatctat
841 caatacatgg atgatttgaa tgtaggatct gatttagaaa taggacagca tagaataaaa
901 atagaggaat taagggaaca cctattaaag tggggattta ccacaccaga caaaaagcat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagta
1021 cagcctatac agctaccaaa taaagaaagc tggactgtca atgatataca gaagctagtg
1081 ggaaaattaa attgggcaag ccagatttat ccaggaatta gagtaagaca cttatgcaaa
1141 tgcattagag gtaccagagc actgacagag gtagtatcac tgacagaaga agcagaatta
1201 gaactagcag aaaacaggga aattctaaaa gaaccagtac atggagtata ctatgaccca
1261 tcaaaagatt taatagcaga aatacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022