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LOCUS	    EU380724		    1302 bp    RNA     linear	VRL 31-JAN-2009
DEFINITION  HIV-1 isolate 347758P from Uganda pol protein (pol) gene, partial
	    cds
ACCESSION   EU380724
VERSION     EU380724.1 GI:170294080
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1302)
            Show all sequences for reference 1
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Analysis of nevirapine (NVP) resistance in Ugandan infants who were
	    HIV infected despite receiving single-Dose (SD) NVP versus SD NVP
	    plus daily NVP up to 6 weeks of age to prevent HIV vertical
	    transmission.
  JOURNAL   J. Infect. Dis.. 198(7); 1075-82 (2008)
  PUBMED    18684096
REFERENCE   2 (bases 1 to 1302)
            Show all sequences for reference 2
  AUTHORS   Church,J.D., Omer,S.B., Guay,L.A., Huang,W., Lidstrom,J.,
	    Moulton,L., Musoke,P., Mmiro,F., Jackson,J.B. and Eshleman,S.H.
  TITLE     Direct Submission
  JOURNAL   Submitted (09-JAN-2008) Pathology, Johns Hopkins Univ. School of
	    Medicine, 720 Rutland Ave. Rm. 646, Baltimore, MD 21205, USA
COMMENT     Ugandan
FEATURES             Location/Qualifiers
     source	     1..1302
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="347758P"
		     /db_xref="taxon:11676"
		     /country="Uganda"
     gene	     <1..>1302
		     /gene="pol"
     CDS	     <1..>1302
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACB13126.1"
		     /db_xref="GI:170294081"
		     /translation="PQITLWQRPLVTVKIEGQLKEALLDTGADDTVLEDINLPGKWKP
		     KMIGGIGGFIKVKQYDQITVEICGKKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGVRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLNVGSDLEIGQHRIKIEELREHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPNKESWTVNDIQKLVGKLNWASQIYPGIRVRHLCKCIRGTRALTEVV
		     SLTEEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQGQG"
BASE COUNT	533 a	 209 c	  265 g    295 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaatagaagg acagctaaaa 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga 
     121 aaatggaagc caaaaatgat agggggaatt ggaggtttta tcaaggtaaa acagtacgat 
     181 cagataactg tagaaatttg tgggaaaaaa gctataggta cagtattagt gggacctaca 
     241 cctgtcaaca taattggaag aaatttgttg actcagattg gttgcacttt aaattttcca 
     301 attagtccta ttgaaactgt accggtaaaa ttaaagccag ggatggatgg cccaaaagtt 
     361 aaacaatggc cgttgacaga agaaaaaata aaagcactaa cagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaagatcggg cctgaaaatc catacaacac tccaatattt 
     481 gctataaaga aaaaagacag tactaagtgg agaaagttag tagattttag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcctgc agggctaaaa 
     601 aagaaaaaat cagtaacagt actggatgta ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttta gaaaatatac cgcattcacc atacccagta taaacaatga gacaccagga 
     721 gttagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttt agaaaacaaa atccagaaat agttatctat 
     841 caatacatgg atgatttgaa tgtaggatct gatttagaaa taggacagca tagaataaaa 
     901 atagaggaat taagggaaca cctattaaag tggggattta ccacaccaga caaaaagcat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagta 
    1021 cagcctatac agctaccaaa taaagaaagc tggactgtca atgatataca gaagctagtg 
    1081 ggaaaattaa attgggcaag ccagatttat ccaggaatta gagtaagaca cttatgcaaa 
    1141 tgcattagag gtaccagagc actgacagag gtagtatcac tgacagaaga agcagaatta 
    1201 gaactagcag aaaacaggga aattctaaaa gaaccagtac atggagtata ctatgaccca 
    1261 tcaaaagatt taatagcaga aatacagaaa caagggcaag gc
//
last modified: Tue May 31 10:56 2022


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