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LOCUS EU347449 693 bp RNA linear VRL 13-MAR-2008
DEFINITION HIV-1 isolate CAP085_2_00 clone 07 from South Africa gag protein
(gag) gene, partial cds
ACCESSION EU347449
VERSION EU347449.1 GI:164605775
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 693)
Show all sequences for reference 1
AUTHORS Chopera,D.R., Woodman,Z., Mlisana,K., Mlotshwa,M., Martin,D.P.,
Seoighe,C., Treurnicht,F., de Rosa,D.A., Hide,W., Karim,S.A.,
Gray,C.M. and Williamson,C.
CONSRTM CAPRISA 002 Study Team
TITLE Transmission of HIV-1 CTL escape variants provides HLA-mismatched
recipients with a survival advantage
JOURNAL PLoS Pathog. 4 (3), E1000033 (2008)
PUBMED 18369479
REFERENCE 2 (bases 1 to 693)
Show all sequences for reference 2
AUTHORS Chopera,D.R., Treurnicht,F. and Williamson,C.
CONSRTM Centre for the AIDS Program of Research in South Africa
TITLE Direct Submission
JOURNAL Submitted (17-DEC-2007) Institute of Infectious Diseases and
Molecular Medicine, University of Cape Town, Wolfson Pavilion Level
3, IIDMM, UCT Faculty Of Health Sciences, Cape Town, Western Cape
7925, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Chopera,D.R., Mlotshwa,M., Woodman,Z., Mlisana,K., de Assis
Rosa,D., Martin,D.P., Abdool Karim,S., Gray,C.M. and Williamson,C.
TITLE Virological and Immunological Factors Associated with HIV-1
Differential Disease Progression in HLA-B*58:01-Positive
Individuals
JOURNAL J. Virol. 85 (14), 7070-7080 (2011)
PUBMED 21613398
FEATURES Location/Qualifiers
source 1..693
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CAP085_2_00"
/db_xref="taxon:11676"
/clone="07"
/country="South Africa"
/collection_date="2005"
/note="subtype: C"
gene <1..>693
/gene="gag"
CDS <1..>693
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY62037.1"
/db_xref="GI:164605776"
/translation="PIVQNIQGQMVHQPLSPRTLNAWVKVIEEKAFSPEVIPMFTALS
EGATPQDLNTMLNTVGGHQAAMQMLKDTINEEAAEWDRIHPVHAGPVAPGQLREPRGS
DIAGTTSNLQEQIAWMTANPPVPVGEIYKRWIILGLNKIVRMYSPVSILDIKQGPKEP
FRDYVDRFFKTLRAEQATQEVKNWMTDTLLVQNANPDCKTILRALGPGATLEEMMTAC
QGVGGPGHKARVL"
BASE COUNT 249 a 135 c 165 g 144 t
ORIGIN
1 cctatagtgc agaatattca agggcaaatg gtacaccagc ccctatcacc tagaactttg
61 aatgcatggg taaaagtaat agaggagaag gcttttagcc cagaggtaat acccatgttt
121 acagcattat cagaaggagc caccccacaa gatttgaaca ccatgttaaa cacagtggga
181 ggacatcaag cagccatgca gatgttaaaa gacaccatta atgaggaggc tgcagaatgg
241 gacagaatac atccagtaca tgcagggcct gttgcaccag gccaattaag agaaccaagg
301 ggaagtgaca tagcaggaac tactagtaac cttcaggaac agatagcatg gatgacagct
361 aacccacctg tcccagtggg agaaatctat aaaagatgga taattctggg tttaaataaa
421 atagtaagaa tgtacagccc tgtcagcatt ttggacataa aacagggacc aaaggaaccc
481 tttagagact atgtagaccg gttctttaaa actttaagag ctgaacaagc tacacaagag
541 gtaaaaaatt ggatgacaga caccttgttg gtccaaaatg caaacccaga ttgtaagacc
601 attttaagag ccttaggacc aggggctaca ttagaagaaa tgatgacagc atgtcaagga
661 gtgggagggc ctggccataa agcaagagtt ttg
//
last modified: Tue May 31 10:56 2022