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LOCUS EU346247 1092 bp RNA linear VRL 31-DEC-2008
DEFINITION HIV-1 isolate 400822_60_p2_2 from USA pol protein (pol) gene,
partial cds
ACCESSION EU346247
VERSION EU346247.1 GI:169635261
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1092)
Show all sequences for reference 1
AUTHORS Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
TITLE Analyses of HIV-1 drug-resistance profiles among infected
adolescents experiencing delayed antiretroviral treatment switch
after initial nonsuppressive highly active antiretroviral therapy.
JOURNAL AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
PUBMED 18479228
REFERENCE 2 (bases 1 to 1092)
Show all sequences for reference 2
AUTHORS Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
TITLE Direct Submission
JOURNAL Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
Hopkins University School of Medicine, 600 N. Wolfe Street, Park
256, Baltimore, MD 21287, USA
FEATURES Location/Qualifiers
source 1..1092
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="400822_60_p2_2"
/isolation_source="subject 400822 plasma drawn at 60
weeks"
/db_xref="taxon:11676"
/clone="p2_2"
/country="USA"
/note="PACTG trial 381"
gene <1..>1092
/gene="pol"
CDS <1..>1092
/gene="pol"
/note="contains PR and RT regions"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACA58405.1"
/db_xref="GI:169635262"
/translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHRAVGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPITLPEKDSWTVNDIQKLVGKLN"
BASE COUNT 423 a 185 c 228 g 256 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacagtaa ggataggggg gcaactaaaa
61 gaggctctat tagatacagg agcagatgat acagtattag aagacatgga tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccca tagaaatttg tggacataga gctgtaggta cagtgttagt aggacctaca
241 cctgtcaaca taattggaag aaatctgtta actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaggcactag tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aaaagaactc aagacttctg ggaagttcaa ttaggaatcc cacatcccgc aggattaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt gcccttagat
661 aaagaattca gaaagtatac tgcctttacc atacctagca taaacaatga gacaccaggg
721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 tgtagcatga caaaaatctt agatcctttc agaaaacaaa atccagacat agtcatctat
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa
901 atagaggaac taagacaaca tctgttaaag tggggattca ccacaccaga caaaaagcat
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta
1021 cagcctataa cgctgccaga gaaagacagc tggactgtca atgacataca gaagttagtt
1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022