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LOCUS	    EU346247		    1092 bp    RNA     linear	VRL 31-DEC-2008
DEFINITION  HIV-1 isolate 400822_60_p2_2 from USA pol protein (pol) gene,
	    partial cds
ACCESSION   EU346247
VERSION     EU346247.1 GI:169635261
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1092)
            Show all sequences for reference 1
  AUTHORS   Agwu,A., Lindsey,J.C., Ferguson,K., Zhang,H., Spector,S.,
	    Rudy,B.J., Ray,S.C., Douglas,S.D., Flynn,P.M. and Persaud,D.
  TITLE     Analyses of HIV-1 drug-resistance profiles among infected
	    adolescents experiencing delayed antiretroviral treatment switch
	    after initial nonsuppressive highly active antiretroviral therapy.
  JOURNAL   AIDS Patient. Care. STDS.. 22(7); 545-52 (2008)
  PUBMED    18479228
REFERENCE   2 (bases 1 to 1092)
            Show all sequences for reference 2
  AUTHORS   Agwu,A., Lindsey,J., Ferguson,K., Zhang,H., Spector,S., Rudy,B.,
	    Ray,S.C., Douglas,S., Flynn,P. and Persaud,D.
  TITLE     Direct Submission
  JOURNAL   Submitted (14-DEC-2007) Pediatrics, Infectious Diseases, Johns
	    Hopkins University School of Medicine, 600 N. Wolfe Street, Park
	    256, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..1092
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="400822_60_p2_2"
		     /isolation_source="subject 400822 plasma drawn at 60
		     weeks"
		     /db_xref="taxon:11676"
		     /clone="p2_2"
		     /country="USA"
		     /note="PACTG trial 381"
     gene	     <1..>1092
		     /gene="pol"
     CDS	     <1..>1092
		     /gene="pol"
		     /note="contains PR and RT regions"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ACA58405.1"
		     /db_xref="GI:169635262"
		     /translation="PQITLWQRPLVTVRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHRAVGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILDPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPITLPEKDSWTVNDIQKLVGKLN"
BASE COUNT	423 a	 185 c	  228 g    256 t
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacagtaa ggataggggg gcaactaaaa 
      61 gaggctctat tagatacagg agcagatgat acagtattag aagacatgga tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccca tagaaatttg tggacataga gctgtaggta cagtgttagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgtta actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg gccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaggcactag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aaaagaactc aagacttctg ggaagttcaa ttaggaatcc cacatcccgc aggattaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt gcccttagat 
     661 aaagaattca gaaagtatac tgcctttacc atacctagca taaacaatga gacaccaggg 
     721 attaggtatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt agatcctttc agaaaacaaa atccagacat agtcatctat 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac taagacaaca tctgttaaag tggggattca ccacaccaga caaaaagcat 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgacaa atggacagta 
    1021 cagcctataa cgctgccaga gaaagacagc tggactgtca atgacataca gaagttagtt 
    1081 ggaaaattga at
//
last modified: Tue May 31 10:56 2022


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