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LOCUS EU342811 2445 bp DNA linear VRL 30-APR-2008
DEFINITION HIV-1 isolate 07SP54-371139 from Spain gag protein (gag) gene,
complete cds; and pol protein (pol) gene, partial cds
ACCESSION EU342811
VERSION EU342811.1 GI:183206836
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2445)
Show all sequences for reference 1
AUTHORS Holguin,A., De Mulder,M. and Yebra,G.
TITLE Direct Submission
JOURNAL Submitted (07-DEC-2007) HIV-1 Molecular epidemiology group.
Infectious Diseases Department, Hospital Carlos III, Sinesio
Delgado Street 10, Madrid 28029, Spain
REFERENCE 2
Show all sequences for reference 2
AUTHORS Holguin,A., De Mulder,M., Yebra,G., Lopez,M. and Soriano,V.
TITLE Increase of non-B subtypes and recombinants among newly diagnosed
HIV-1 native Spaniards and immigrants in Spain.
JOURNAL Curr. HIV. Res.. 6(4); 327-34 (2008)
PUBMED 18691031
REFERENCE 3
Show all sequences for reference 3
AUTHORS Yebra,G., Rivas,P., Herrero,M.D., Lopez,M., De Mulder,M.,
Puente,S., Ramirez-Olivencia,G., Soriano,V. and Holguin,A.
TITLE Clinical differences and viral diversity between newly HIV type
1-diagnosed African and non-African patients in Spain (2005-2007).
JOURNAL AIDS Res. Hum. Retroviruses. 25(1); 37-44 (2009)
PUBMED 19182919
FEATURES Location/Qualifiers
source 1..2445
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="07SP54-371139"
/isolation_source="plasma of subject coming from
Equatorial Guinea and residing in Spain"
/db_xref="taxon:11676"
/country="Spain"
/note="subtype: recombinant CRF02_AG"
gene 1..1506
/gene="gag"
CDS 1..1506
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ACC54582.1"
/db_xref="GI:183206837"
/translation="MGARASVLSGGKLDAWEKIRLRPGGKKQYRLKHIVWASRELDRF
ALNPGLLETAEGCQQLIEQLQSTLKTGSEEIRSLYNTIATLWCVHQRIEIKDTKEALD
KIEEMQNKSKQKTQQAAAATGSSSQNYPIVQNAQGQMTHQSMSPRTLNAWVKVIEEKA
FSPKVIPMFTALSEGATPQDLNLMLNIVGGHQAAMQMLKDTINEEAAEWDRQHPVHAG
PIPPGQMREPRGSDIAGTTSTLQEQIGWMTSNPPVPVGEIYKRWIVLGLNKIVRMYSP
VSILDIRQGPKEPFRDYVDRFFKVLRAEQGTQEVKNWMTETLMVQNANPDCKSILRAL
GPGATLEEMMTACQGVGGPSHKARVLAEAMSQAQQPHVMIQRGNFRGQRTLKCFNCGK
EGHLARNCKAPRKGCWKCGKEHQMKDCTERQANFLGKIWPSNKGRPGNFPQSRPEPTA
PPAESVGMPTAPPAESVGMGEEIASSPRQEPRDKELYPPLTSLKSLFGNDP"
gene <1275..>2445
/gene="pol"
CDS <1275..>2445
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ACC54583.1"
/db_xref="GI:183206838"
/translation="FFRENLAFQQGEARKFSSEQTRANSPTSRECGDANSPTSRECGD
GGRDSLLPAARTEGQGAIPSLNFPQITLWQRPLVTVRIGGQLIEALLDTGADDTVLEE
INLPGKWKPKMIGGIGGFIKVRQYDQILLEICGKKAIGTVLVGETPVNIIGRNMLTQI
GCTLNFPISPIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICADMEKEGKISKIGP
ENPYNTPVFAIKKKDSTKWRKVVDFRELNKRTQDFWEVQLGIPHPAGLEKKKSITVLD
VGDAYFSVPLDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKIL
EPFRTRNPDIVIYQYVDDLYVSSDLEIEQHRAKIEELREHLLKWGLTTPDKKHQKE"
BASE COUNT 922 a 435 c 584 g 503 t 1 other
ORIGIN
1 atgggtgcga gagcgtcagt gttaagtggg ggaaaattag atgcgtggga gaaaattcgg
61 ctaaggccag ggggaaagaa acaatataga ctaaaacata tagtatgggc aagcagggag
121 ttggacagat tcgcactcaa ccctggcctt ttagaaacag cagaagggtg tcagcaatta
181 atagagcagt tacaatcaac tctcaagaca ggatcagaag aaattagatc attatataat
241 acaatagcaa ccctttggtg cgtgcatcaa aggatagaaa taaaagacac caaggaagcc
301 ttagataaaa tagaggaaat gcaaaataag agcaagcaaa agacacagca ggcagccgct
361 gccacaggaa gcagtagcca gaattaccct atagtgcaaa atgcacaagg gcaaatgaca
421 catcagtcca tgtcacctag gactttaaat gcatgggtga aggtaataga agaaaaggct
481 ttcagcccaa aagtaatacc catgtttaca gcattatcag aaggrgccac cccacaagat
541 ttaaatctga tgctaaacat agtgggggga caccaggcag caatgcagat gttaaaagat
601 accatcaatg aggaagctgc agaatgggac aggcaacatc cagtacatgc agggcctatt
661 ccaccaggcc agatgaggga accaagggga agtgacatag caggaactac tagtaccctt
721 caagaacaaa tagggtggat gacaagcaat ccacctgtcc cagtgggaga aatctataaa
781 agatggatag tcctgggatt aaataaaata gtaagaatgt atagccctgt cagcattttg
841 gacataagac aagggccaaa agaacccttt agagattatg tagataggtt ctttaaagtt
901 ttgagagctg aacaaggtac acaggaggta aagaactgga tgacagaaac cttgatggtc
961 caaaatgcga atccagactg taagtccatt ttaagagcat taggaccagg ggctacctta
1021 gaagaaatga tgacagcatg tcagggagtg ggagggccta gccacaaagc aagggttttg
1081 gctgaggcaa tgagtcaagc acagcagccc cacgtaatga tacagagagg caattttagg
1141 ggccagagaa cattaaagtg tttcaactgt ggcaaagaag gacacctagc cagaaattgc
1201 aaggccccta ggaaaggctg ttggaaatgt ggaaaggagc accaaatgaa agactgtact
1261 gaaagacagg ctaatttttt agggaaaatc tggccttcca acaaggggag gccaggaaat
1321 tttcctcaga gcagaccaga gccaacagcc ccaccagcag agagtgtggg gatgccaaca
1381 gccccaccag cagagagtgt ggggatgggg gaagagatag cctcctcccc gcggcaagaa
1441 ccgagggaca aggagctata ccctccctta acttccctca aatcactctt tggcaacgac
1501 ccttagtcac agtaagaata gggggacagc taatagaagc tctattagac acaggagcag
1561 atgatacagt attagaagaa ataaatttac caggaaaatg gaaaccaaaa atgatagggg
1621 gaattggagg ttttatcaaa gtaagacaat atgatcagat acttttagaa atttgtggaa
1681 aaaaggctat aggtacagta ttagtaggag agacacctgt caacataatt ggacgaaata
1741 tgttgactca gattggttgt actttaaatt ttccaattag tcctattgaa actgtaccag
1801 taaaattaaa gccaggaatg gatggcccaa aggttaaaca atggccattg acagaagaaa
1861 aaataaaagc attaacagaa atttgtgcag atatggaaaa ggaaggaaaa atttcaaaga
1921 ttgggcctga aaatccatac aatactccag tatttgccat aaagaaaaaa gatagtacta
1981 aatggagaaa agtagtagat ttcagagaac tcaataagag aactcaagac ttctgggagg
2041 tccagttagg aatacctcat cccgcaggat tagaaaagaa aaaatcaata acagtactag
2101 atgtagggga tgcatatttt tcagttccct tagataaaga ctttagaaag tatactgcat
2161 tcactatacc tagtataaat aatgagacac caggaattag atatcagtac aatgtgctac
2221 cacagggatg gaaaggatca ccagcaatat ttcaggcaag catgacaaaa atcttagagc
2281 cctttagaac aagaaatcca gatatagtga tctaccaata tgtggatgat ttatatgtaa
2341 gttctgactt agagatagaa cagcatagag caaaaataga ggagttgaga gaacatctac
2401 tgaaatgggg attaaccaca ccagacaaaa aacatcagaa agaac
//
last modified: Tue May 31 10:56 2022