HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EU242038		    1530 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2981 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU242038
VERSION     EU242038.1 GI:166025659
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1530)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1530)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1530
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2981"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1530
		     /gene="gag"
     CDS	     1..1530
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78140.1"
		     /db_xref="GI:166025660"
		     /translation="MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERF
		     AVNPGLLETSEGCRQILGQLQPXLQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALE
		     KIEEEQNKSKKKAQQAAAAAADTGNNSQVRNNSQVSQNYPIVQNIQGQMVHQAISPRT
		     LNAWVKVVEEKAFSPEVIPMFXALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEA
		     AEWDRLHPXXAGPXAPGQXREPRGSDIAGTTSTLQEQIXWMTXNPPXPVGEIYKRWII
		     LGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQN
		     XNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSXTIMMQKGNF
		     RNQRKTIKCFNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCXERQANFLGKIWPSH
		     KGRPGNFLQSRPEPTAPPEESFRFGEETATPXPKQEQIDKDLYPLASLXSLFGNDPSS
		     Q"
BASE COUNT	559 a	 292 c	  353 g    278 t     48 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataaatggga aaaaattcgg 
      61 ttaaggccag gaggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagtcaa tcctggcctg ttagaaacat cagarggctg tagacaaata 
     181 ctgggacagc tacaaccakc yctycagaca ggatcagaag aacttagatc attatataat 
     241 acagtagcag tcctctattg tgtrcatcaa aggatagatg taaaagacac yaaggaagct 
     301 ttagaraaaa tagaggagga gcaaaacaaa agtaagaaaa aagcacagca agcagcagct 
     361 gcagcagctg acacaggaaa caacagccar gtcagaaaya acagccargt cagccaaaat 
     421 taccccatag tgcagaayat tcaggggcaa atggtacatc argccatatc acctagaacc 
     481 ttaaatgcat gggtaaargt agtagaagag aaggctttca gcccagaagt aatacccatg 
     541 tttkcagcwt tatcagaagg agccacccca caagatttaa acaccatgyt aaacacagtg 
     601 ggrggacatc aagcagccat gcaaatgtta aaagaaacca tcaatgagga agctgcagar 
     661 tgggatagat tgcatccagy gcadgcaggr cctrttgcac caggccarrt gagrgaacca 
     721 aggggaagtg ayatagcagg aactactagt acccttcagg aacaaatags rtggatgaca 
     781 mrtaatccac ctaycccagt aggagaaaty tataaaagat ggataatyct rggaytaaat 
     841 aaaatagtaa gaatgtatag ccctaccagc attctggaca taaaacaagg accaaaggaa 
     901 ccttttagag actatgtaga caggttctat aaractctaa gagccgagca agcttcacar 
     961 gaggtaaaaa attggatgac agaaaccttg ttggtccaaa atkcraaccc agattgtaag 
    1021 actattttaa aagcattagg accagcagct acattagaag agatgatgac agcatgtcaa 
    1081 ggagtgggag gacccggcca taaagcaaga gttttggcag aagcaatgag ycaggtaaca 
    1141 aattcarcta ccataatgat gcagaaaggc aattttagga accaaagaaa gactattaag 
    1201 tgtttcaatt gtggcaaaga aggacaccta gccagaaatt gcagggcccc taggaaaagg 
    1261 ggctgttgga aatgtggaaa ggagggacac caaatgaaag actgtamtga gagacaggct 
    1321 aattttttag ggaaaatctg gccttcccac aagggaaggc cagggaactt tctccagagc 
    1381 agaccagagc caacagcccc accagaagag agcttcaggt ttggggaaga gacagcaact 
    1441 cccyctccga agcaggarca gatagacaag gayctrtatc ctttrgcttc cctcaratca 
    1501 ctctttggca acgacccctc gtcacaataa 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health