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LOCUS EU242038 1530 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2981 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU242038
VERSION EU242038.1 GI:166025659
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1530)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1530)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1530
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2981"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1530
/gene="gag"
CDS 1..1530
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78140.1"
/db_xref="GI:166025660"
/translation="MGARASVLSGGELDKWEKIRLRPGGKKKYRLKHIVWASRELERF
AVNPGLLETSEGCRQILGQLQPXLQTGSEELRSLYNTVAVLYCVHQRIDVKDTKEALE
KIEEEQNKSKKKAQQAAAAAADTGNNSQVRNNSQVSQNYPIVQNIQGQMVHQAISPRT
LNAWVKVVEEKAFSPEVIPMFXALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEA
AEWDRLHPXXAGPXAPGQXREPRGSDIAGTTSTLQEQIXWMTXNPPXPVGEIYKRWII
LGLNKIVRMYSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQN
XNPDCKTILKALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSXTIMMQKGNF
RNQRKTIKCFNCGKEGHLARNCRAPRKRGCWKCGKEGHQMKDCXERQANFLGKIWPSH
KGRPGNFLQSRPEPTAPPEESFRFGEETATPXPKQEQIDKDLYPLASLXSLFGNDPSS
Q"
BASE COUNT 559 a 292 c 353 g 278 t 48 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataaatggga aaaaattcgg
61 ttaaggccag gaggaaagaa aaaatataga ttaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagtcaa tcctggcctg ttagaaacat cagarggctg tagacaaata
181 ctgggacagc tacaaccakc yctycagaca ggatcagaag aacttagatc attatataat
241 acagtagcag tcctctattg tgtrcatcaa aggatagatg taaaagacac yaaggaagct
301 ttagaraaaa tagaggagga gcaaaacaaa agtaagaaaa aagcacagca agcagcagct
361 gcagcagctg acacaggaaa caacagccar gtcagaaaya acagccargt cagccaaaat
421 taccccatag tgcagaayat tcaggggcaa atggtacatc argccatatc acctagaacc
481 ttaaatgcat gggtaaargt agtagaagag aaggctttca gcccagaagt aatacccatg
541 tttkcagcwt tatcagaagg agccacccca caagatttaa acaccatgyt aaacacagtg
601 ggrggacatc aagcagccat gcaaatgtta aaagaaacca tcaatgagga agctgcagar
661 tgggatagat tgcatccagy gcadgcaggr cctrttgcac caggccarrt gagrgaacca
721 aggggaagtg ayatagcagg aactactagt acccttcagg aacaaatags rtggatgaca
781 mrtaatccac ctaycccagt aggagaaaty tataaaagat ggataatyct rggaytaaat
841 aaaatagtaa gaatgtatag ccctaccagc attctggaca taaaacaagg accaaaggaa
901 ccttttagag actatgtaga caggttctat aaractctaa gagccgagca agcttcacar
961 gaggtaaaaa attggatgac agaaaccttg ttggtccaaa atkcraaccc agattgtaag
1021 actattttaa aagcattagg accagcagct acattagaag agatgatgac agcatgtcaa
1081 ggagtgggag gacccggcca taaagcaaga gttttggcag aagcaatgag ycaggtaaca
1141 aattcarcta ccataatgat gcagaaaggc aattttagga accaaagaaa gactattaag
1201 tgtttcaatt gtggcaaaga aggacaccta gccagaaatt gcagggcccc taggaaaagg
1261 ggctgttgga aatgtggaaa ggagggacac caaatgaaag actgtamtga gagacaggct
1321 aattttttag ggaaaatctg gccttcccac aagggaaggc cagggaactt tctccagagc
1381 agaccagagc caacagcccc accagaagag agcttcaggt ttggggaaga gacagcaact
1441 cccyctccga agcaggarca gatagacaag gayctrtatc ctttrgcttc cctcaratca
1501 ctctttggca acgacccctc gtcacaataa
//
last modified: Tue May 31 10:56 2022