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LOCUS	    EU242037		    1503 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2980 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU242037
VERSION     EU242037.1 GI:166025657
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1503)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1503)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1503
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2980"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1503
		     /gene="gag"
     CDS	     1..1503
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78139.1"
		     /db_xref="GI:166025658"
		     /translation="MGARASVLSGGELDRWEXIRLRPGGKKKYRLKHIVWASRELERF
		     AVNPGLLETSEGCRQIXGQLQPSLQTGSEELRSLFNTIAVLYCVHQKIEVKDTKEALE
		     XIEEEQNKXKKKAQQAAADTKNSSPVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
		     HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTIL
		     KALGPGATLEXMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC
		     FNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
		     NRPEPTAPPAESFRFGEETTAPPQKQEPIDKELYPLASLKSLFGNDPSSQ"
BASE COUNT	546 a	 291 c	  357 g    285 t     24 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattgg atagatggga raraattcgg 
      61 ttamggccag ggggaaagaa aaaatataga ctaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagtyaa ccctggcctk ttagaaacat cagagggatg tagacaaata 
     181 mtrggacagc tacaaccatc ccttcagaca ggatcagaag aactcagatc attatttaat 
     241 acaatagcag tcctctattg tgtgcatcag aaratagarg taaaagacac caaggaagct 
     301 ttagagarga tagaggaaga gcaaaacaaa aktaagaaaa argcacagca agcagcagct 
     361 gacacaaaaa acagcagccc ggtcagccaa aattacccta tagtgcagaa ccttcaggga 
     421 caaatggtac atcaggccat atcacctaga actttaaatg catgggtaaa agtagtagaa 
     481 gaaaaggctt tcagcccgga agtaataccc atgttttcag cattatcaga rggagccacc 
     541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc tatgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgct gaatgggata gattgcatcc agtgcatgca 
     661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact 
     721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa 
     781 atctataaaa gatggataat cctgggrtta aataaaatag taagaatgta tagccctacc 
     841 agcattttgg acataagaca aggaccaaag gaacccttta gagaytatgt agaccggttc 
     901 tataaaactc taagagcyga gcaagcctca caggaggtaa aaaattggat gacagaracc 
     961 ttattggtcc aaaatgcaaa cccagattgt aagactattt taaaagcact aggaccagga 
    1021 gctacattag aagamatgat gacagcatgt cagggagtgg ggggacccgg ccataaagca 
    1081 agagttttgg ctgargcaat gagccaagta acaaattcag ctaccataat gatgcagaga 
    1141 ggcaayttta gaaaccaaag aaagactgtt aagtgtttca attgtggcaa agaagggcac 
    1201 atagccagaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga 
    1261 caccaaatga aagattgtac tgaragacag gctaattttt tagggaarat ctggccttcc 
    1321 cacaagggaa ggccagggaa ttttcttcag aacagaccag agccaacagc cccaccagca 
    1381 gagagcttca ggtttgggga rgagacaaca gctccccctc agaarcagga gccgatagac 
    1441 aaggaactgt atcctttagc ttccctcaaa tcactctttg gcaacgaccc ctcgtcacaa 
    1501 taa
//
last modified: Tue May 31 10:56 2022


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