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LOCUS EU242037 1503 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2980 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU242037
VERSION EU242037.1 GI:166025657
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1503)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1503)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1503
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2980"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1503
/gene="gag"
CDS 1..1503
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78139.1"
/db_xref="GI:166025658"
/translation="MGARASVLSGGELDRWEXIRLRPGGKKKYRLKHIVWASRELERF
AVNPGLLETSEGCRQIXGQLQPSLQTGSEELRSLFNTIAVLYCVHQKIEVKDTKEALE
XIEEEQNKXKKKAQQAAADTKNSSPVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNANPDCKTIL
KALGPGATLEXMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC
FNCGKEGHIARNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
NRPEPTAPPAESFRFGEETTAPPQKQEPIDKELYPLASLKSLFGNDPSSQ"
BASE COUNT 546 a 291 c 357 g 285 t 24 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattgg atagatggga raraattcgg
61 ttamggccag ggggaaagaa aaaatataga ctaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagtyaa ccctggcctk ttagaaacat cagagggatg tagacaaata
181 mtrggacagc tacaaccatc ccttcagaca ggatcagaag aactcagatc attatttaat
241 acaatagcag tcctctattg tgtgcatcag aaratagarg taaaagacac caaggaagct
301 ttagagarga tagaggaaga gcaaaacaaa aktaagaaaa argcacagca agcagcagct
361 gacacaaaaa acagcagccc ggtcagccaa aattacccta tagtgcagaa ccttcaggga
421 caaatggtac atcaggccat atcacctaga actttaaatg catgggtaaa agtagtagaa
481 gaaaaggctt tcagcccgga agtaataccc atgttttcag cattatcaga rggagccacc
541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc tatgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgct gaatgggata gattgcatcc agtgcatgca
661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact
721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa
781 atctataaaa gatggataat cctgggrtta aataaaatag taagaatgta tagccctacc
841 agcattttgg acataagaca aggaccaaag gaacccttta gagaytatgt agaccggttc
901 tataaaactc taagagcyga gcaagcctca caggaggtaa aaaattggat gacagaracc
961 ttattggtcc aaaatgcaaa cccagattgt aagactattt taaaagcact aggaccagga
1021 gctacattag aagamatgat gacagcatgt cagggagtgg ggggacccgg ccataaagca
1081 agagttttgg ctgargcaat gagccaagta acaaattcag ctaccataat gatgcagaga
1141 ggcaayttta gaaaccaaag aaagactgtt aagtgtttca attgtggcaa agaagggcac
1201 atagccagaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga
1261 caccaaatga aagattgtac tgaragacag gctaattttt tagggaarat ctggccttcc
1321 cacaagggaa ggccagggaa ttttcttcag aacagaccag agccaacagc cccaccagca
1381 gagagcttca ggtttgggga rgagacaaca gctccccctc agaarcagga gccgatagac
1441 aaggaactgt atcctttagc ttccctcaaa tcactctttg gcaacgaccc ctcgtcacaa
1501 taa
//
last modified: Tue May 31 10:56 2022