View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EU241996 1503 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2939 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241996
VERSION EU241996.1 GI:166025575
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1503)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1503)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1503
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2939"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1503
/gene="gag"
CDS 1..1503
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78098.1"
/db_xref="GI:166025576"
/translation="MGARASVLSGGELDRWEKIRLRPGGKKQYRLKHLVWASRELERF
AVNAGLLETSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQKIDVRDTKEALD
KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
XAGPIAPGQXREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTIL
KALGPXATLEEMMTACQGVGGPGHKARVLAEAMSQVTSPATIMMQRGNFKNQRKAVKC
FNCGREGHIAKHCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSXXGRPGNFLQ
SRPEPTAPPEESFRFGEETATPPQKQGTRDKELYPVTSLKSLFGSDPSLQ"
BASE COUNT 544 a 291 c 367 g 285 t 16 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg
61 ttaaggccag ggggaaagaa acaatataga ttaaaacatt tagtatgggc aagcagggag
121 ytagaacgat tcgcagttaa tgctggcctt ttagaaacat cagagggctg tagacaaata
181 ctgggacagc tacaaccagc ccttcagaca ggatcagarg aactyagatc attatataat
241 acagtagcag tcctctattg tgtgcatcaa aagatagatg taagagacac caaggaagct
301 ttagacaaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca agcagcagct
361 gacacaggaa acagcagyca ggtcagccaa aattacccta tagtgcagaa ccttcagggg
421 caaatggtgc atcaggccat atcacctaga actttaaatg cctgggtaaa agtagtagaa
481 gaaaaggctt tcagcccaga agtgataccc atgttttcag cattatcaga aggagccacc
541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaggcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgct gaatgggaya gattgcatcc agtrcmtgca
661 gggcctattg caccaggcca gmtgagagaa ccaaggggaa gtgacatagc aggaactacc
721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa
781 atttataaaa gatggataat cttgggatta aataagatag taagaatgta tagccctacc
841 agcattttgg acataagaca aggaccaaag gaacctttta gagactatgt agaccggttc
901 tacaaaactc taagagctga gcaagcttca caggaggtaa aaaattggat gacagaaacc
961 ttattggtcc aaaattcaaa cccagattgy aagactattt taaaagcatt gggaccarca
1021 gctacactag aagaaatgat gacagcatgt cagggagtgg gaggacccgg ccataaagca
1081 agagtcttgg ctgaagcaat gagccaagta acaagtccag ctaccataat gatgcagaga
1141 ggcaatttta aaaaccaaag aaaggctgtt aaatgtttca attgtggcag agaaggrcac
1201 atagccaaac actgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga
1261 caccaaatga aagattgcac tgagagacag gctaattttt tagggaarat ctggccttcc
1321 cmcaraggaa ggccagggaa ttttcttcag agcagaccag agccaacagc cccaccagaa
1381 gagagcttca ggtttgggga agagacagca actccccctc agaagcaggg gacgagagac
1441 aaggaactgt atcctgtaac ytccctcaaa tcactctttg gcagcgaccc ytcgttacaa
1501 taa
//
last modified: Tue May 31 10:56 2022