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LOCUS	    EU241996		    1503 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2939 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241996
VERSION     EU241996.1 GI:166025575
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1503)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1503)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1503
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2939"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1503
		     /gene="gag"
     CDS	     1..1503
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78098.1"
		     /db_xref="GI:166025576"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKQYRLKHLVWASRELERF
		     AVNAGLLETSEGCRQILGQLQPALQTGSEELRSLYNTVAVLYCVHQKIDVRDTKEALD
		     KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
		     XAGPIAPGQXREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTIL
		     KALGPXATLEEMMTACQGVGGPGHKARVLAEAMSQVTSPATIMMQRGNFKNQRKAVKC
		     FNCGREGHIAKHCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSXXGRPGNFLQ
		     SRPEPTAPPEESFRFGEETATPPQKQGTRDKELYPVTSLKSLFGSDPSLQ"
BASE COUNT	544 a	 291 c	  367 g    285 t     16 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag atagatggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa acaatataga ttaaaacatt tagtatgggc aagcagggag 
     121 ytagaacgat tcgcagttaa tgctggcctt ttagaaacat cagagggctg tagacaaata 
     181 ctgggacagc tacaaccagc ccttcagaca ggatcagarg aactyagatc attatataat 
     241 acagtagcag tcctctattg tgtgcatcaa aagatagatg taagagacac caaggaagct 
     301 ttagacaaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca agcagcagct 
     361 gacacaggaa acagcagyca ggtcagccaa aattacccta tagtgcagaa ccttcagggg 
     421 caaatggtgc atcaggccat atcacctaga actttaaatg cctgggtaaa agtagtagaa 
     481 gaaaaggctt tcagcccaga agtgataccc atgttttcag cattatcaga aggagccacc 
     541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaggcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgct gaatgggaya gattgcatcc agtrcmtgca 
     661 gggcctattg caccaggcca gmtgagagaa ccaaggggaa gtgacatagc aggaactacc 
     721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa 
     781 atttataaaa gatggataat cttgggatta aataagatag taagaatgta tagccctacc 
     841 agcattttgg acataagaca aggaccaaag gaacctttta gagactatgt agaccggttc 
     901 tacaaaactc taagagctga gcaagcttca caggaggtaa aaaattggat gacagaaacc 
     961 ttattggtcc aaaattcaaa cccagattgy aagactattt taaaagcatt gggaccarca 
    1021 gctacactag aagaaatgat gacagcatgt cagggagtgg gaggacccgg ccataaagca 
    1081 agagtcttgg ctgaagcaat gagccaagta acaagtccag ctaccataat gatgcagaga 
    1141 ggcaatttta aaaaccaaag aaaggctgtt aaatgtttca attgtggcag agaaggrcac 
    1201 atagccaaac actgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaggaagga 
    1261 caccaaatga aagattgcac tgagagacag gctaattttt tagggaarat ctggccttcc 
    1321 cmcaraggaa ggccagggaa ttttcttcag agcagaccag agccaacagc cccaccagaa 
    1381 gagagcttca ggtttgggga agagacagca actccccctc agaagcaggg gacgagagac 
    1441 aaggaactgt atcctgtaac ytccctcaaa tcactctttg gcagcgaccc ytcgttacaa 
    1501 taa
//
last modified: Tue May 31 10:56 2022


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