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LOCUS	    EU241989		    1512 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2932 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241989
VERSION     EU241989.1 GI:166025561
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1512)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1512)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1512
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2932"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1503
		     /gene="gag"
     CDS	     1..1503
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78091.1"
		     /db_xref="GI:166025562"
		     /translation="MGARASVLSGGKLDHWEXIRLRPGGXKKYRLKHJVWASRELERF
		     AVNPGLLETAEGCRQILRQLQPSLQTGSEELKSLFNTVAVLYCVHZRIEIKDTKEALD
		     KIEEEQNKXKKXQPAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEE
		     KAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVX
		     AGPIAPGQXREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGEIYKRWIILGLNKIVRMY
		     SPVSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILK
		     ALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPTIMMQRGNGRDQRKTVKCFN
		     CGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNR
		     PETIAPLEPTAPPEESFXFGXGTTPSQKQEKIDKELYPLASLKSLFGNDP"
BASE COUNT	553 a	 286 c	  359 g    293 t     21 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggaaaattag atcattggga aaraatacgg 
      61 ttaaggccag gaggarmsaa aaaatatcgc ttaaaacatm tagtatgggc aagcagagag 
     121 ctagaacgat ttgcagttaa tcctggcctt ttagagacag cagaaggctg tagacaaata 
     181 ctgagacagt tacagccatc ccttcagaca ggatcagaag arcttaaatc attatttaat 
     241 acagtagcag tcctctattg tgtgcatsaa aggatagaga taaaagacac caaagaagct 
     301 ttagacaaga tagaggaaga acaaaacaaa aktaagaaag yacagccagc agcggctgac 
     361 acaggaaaca acagtcaggt cagycaaaat taccctatag tacagaacct tcaggggcaa 
     421 atggtacatc aggccatatc acctagaact ctaaatgcat gggtaaaagt aatagaagag 
     481 aaggctttca gcccggaagt aatacccatg tttacagcat tgtcagaagg agccacccca 
     541 caagatttaa acaccatgct aaacacagtg gggggacatc aagcagccat gcaaatgtta 
     601 aaagaaacta ttaatgagga agctgcagaa tgggatagat tgcatccagt gcamgcaggg 
     661 cctattgcac caggacagat ragagaacca aggggaagtg atatagcagg aactactagt 
     721 accctccagg aacaaatagc mtggatgaca agtaatccac ctgttccagt aggagaaatc 
     781 tataaaagat ggataatcct gggattaaat aaaatagtaa gaatgtatag ccctgtcagc 
     841 attctggata taaaacargg accaaaggaa ccctttagag actatgtaga ccggttctat 
     901 aaagttctaa gagccgagca agcttcacag gatgtaaaaa attggatgac agaaaccttg 
     961 ttggtccaaa atgcgaaccc agactgtaag actattttaa aagcattggg accagcagct 
    1021 acattagaag aaatgatgac agcatgtcaa ggagtggggg gacccggtca taaagcaaga 
    1081 gttttggctg aagcaatgag ccaagtaaca aatcctacca taatgatgca gagaggtaat 
    1141 ggtagggacc aaagaaaaac tgttaaatgt ttcaattgtg gcaaagaagg gcacatagca 
    1201 aaaaattgca gggcccctag raaaaagggt tgttggaaat gtggaaggga agggcaccaa 
    1261 atgaaagatt gtaccgagag acaggctaat tttttaggga agatctggcc ttcccacaar 
    1321 ggaaggccgg graacttyct tcagaacaga ccagagacaa tagccccact agagccaaca 
    1381 gccccaccag aagagagctt cargtttggg gawgggacaa ctccctccca gaagcaggag 
    1441 aagatagaca aggaactgta tcccttagct tccctcaaat cactctttgg caacgacccy 
    1501 tagtcacaat aa
//
last modified: Tue May 31 10:56 2022


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