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LOCUS EU241989 1512 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2932 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241989
VERSION EU241989.1 GI:166025561
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1512)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1512)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1512
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2932"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1503
/gene="gag"
CDS 1..1503
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78091.1"
/db_xref="GI:166025562"
/translation="MGARASVLSGGKLDHWEXIRLRPGGXKKYRLKHJVWASRELERF
AVNPGLLETAEGCRQILRQLQPSLQTGSEELKSLFNTVAVLYCVHZRIEIKDTKEALD
KIEEEQNKXKKXQPAAADTGNNSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVIEE
KAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPVX
AGPIAPGQXREPRGSDIAGTTSTLQEQIAWMTSNPPVPVGEIYKRWIILGLNKIVRMY
SPVSILDIKQGPKEPFRDYVDRFYKVLRAEQASQDVKNWMTETLLVQNANPDCKTILK
ALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNPTIMMQRGNGRDQRKTVKCFN
CGKEGHIAKNCRAPRKKGCWKCGREGHQMKDCTERQANFLGKIWPSHKGRPGNFLQNR
PETIAPLEPTAPPEESFXFGXGTTPSQKQEKIDKELYPLASLKSLFGNDP"
BASE COUNT 553 a 286 c 359 g 293 t 21 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggaaaattag atcattggga aaraatacgg
61 ttaaggccag gaggarmsaa aaaatatcgc ttaaaacatm tagtatgggc aagcagagag
121 ctagaacgat ttgcagttaa tcctggcctt ttagagacag cagaaggctg tagacaaata
181 ctgagacagt tacagccatc ccttcagaca ggatcagaag arcttaaatc attatttaat
241 acagtagcag tcctctattg tgtgcatsaa aggatagaga taaaagacac caaagaagct
301 ttagacaaga tagaggaaga acaaaacaaa aktaagaaag yacagccagc agcggctgac
361 acaggaaaca acagtcaggt cagycaaaat taccctatag tacagaacct tcaggggcaa
421 atggtacatc aggccatatc acctagaact ctaaatgcat gggtaaaagt aatagaagag
481 aaggctttca gcccggaagt aatacccatg tttacagcat tgtcagaagg agccacccca
541 caagatttaa acaccatgct aaacacagtg gggggacatc aagcagccat gcaaatgtta
601 aaagaaacta ttaatgagga agctgcagaa tgggatagat tgcatccagt gcamgcaggg
661 cctattgcac caggacagat ragagaacca aggggaagtg atatagcagg aactactagt
721 accctccagg aacaaatagc mtggatgaca agtaatccac ctgttccagt aggagaaatc
781 tataaaagat ggataatcct gggattaaat aaaatagtaa gaatgtatag ccctgtcagc
841 attctggata taaaacargg accaaaggaa ccctttagag actatgtaga ccggttctat
901 aaagttctaa gagccgagca agcttcacag gatgtaaaaa attggatgac agaaaccttg
961 ttggtccaaa atgcgaaccc agactgtaag actattttaa aagcattggg accagcagct
1021 acattagaag aaatgatgac agcatgtcaa ggagtggggg gacccggtca taaagcaaga
1081 gttttggctg aagcaatgag ccaagtaaca aatcctacca taatgatgca gagaggtaat
1141 ggtagggacc aaagaaaaac tgttaaatgt ttcaattgtg gcaaagaagg gcacatagca
1201 aaaaattgca gggcccctag raaaaagggt tgttggaaat gtggaaggga agggcaccaa
1261 atgaaagatt gtaccgagag acaggctaat tttttaggga agatctggcc ttcccacaar
1321 ggaaggccgg graacttyct tcagaacaga ccagagacaa tagccccact agagccaaca
1381 gccccaccag aagagagctt cargtttggg gawgggacaa ctccctccca gaagcaggag
1441 aagatagaca aggaactgta tcccttagct tccctcaaat cactctttgg caacgacccy
1501 tagtcacaat aa
//
last modified: Tue May 31 10:56 2022