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LOCUS EU241980 1518 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2923 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241980
VERSION EU241980.1 GI:166025543
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1518)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1518)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1518
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2923"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1518
/gene="gag"
CDS 1..1518
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78082.1"
/db_xref="GI:166025544"
/translation="MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERF
AVNPGLLETSAGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALD
KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
YSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTIL
KALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATNSTXIMMQKGNFRNQRKXVKC
FNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKXCTERQANFLGKIWPSHKGRPGNFLQ
SXPEPSAPSAPPAESFRFGEETKTPSQKQELIDLDKEVYPLTSLRSLFGNDPSSK"
BASE COUNT 563 a 292 c 362 g 295 t 6 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataggtggga aaaaattcgg
61 ttaaggccag ggggaaagaa aaaatataaa ttaaaacata tagtatgggc aagcagggag
121 ctagaacgat ttgcagttaa tcctggccta ttagaaacat cagcaggctg tagacaaata
181 ctggaacagc tacaaccatc ccttcagaca ggatcagaag aacttaaatc attatataat
241 acagtagcaa ccctctattg tgtgcatcaa aagatagatg taaaagacac caaggaagct
301 ttagataaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca agcggcagct
361 gacacaggaa acagcagcca ggtcagccaa aattacccta tagtgcagaa tctccagggg
421 caaatggtac atcaagccat atcacctaga actttaaatg catgggtaaa agtagtagaa
481 gaaaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggagccacc
541 ccacaagatt taaayaccat gctaaacaca gtggggggac atcaggcagc catgcagatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gattgcatcc agtgcatgca
661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact
721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa
781 atctataaaa gatggataat cctgggatta aataaaatag taaggatgta tagtcctacc
841 agcattctgg atataaaaca aggaccaaag gaacccttta gagactatgt agaccggttc
901 tataaaactc taagagccga gcaagcttca caggaggtaa aaaattggat gacagaaacc
961 ttgttggtcc aaaattcgaa cccagattgt aagactattt taaaagcatt gggaccagca
1021 gctaccctag aagaaatgat gacagcatgt cagggagtgg gaggacccag ccataaagca
1081 agggttttgg cggaagcaat gagccaagca acaaattcaa ctrccataat gatgcagaaa
1141 ggtaatttta gaaaccaaag aaagvytgtt aagtgtttca attgtggcaa agaaggacac
1201 atagccagaa attgcagggc ccctaggaaa aggggctgtt ggaaatgtgg aaaggaagga
1261 caccaaatga aagaktgtac tgaaagacag gctaattttt tagggaagat ctggccttcc
1321 cacaaaggaa ggccagggaa ttttctccag agcrgaccag aaccatcagc accatcagcc
1381 ccaccagcag agagcttcag gtttggggag gagacaaaaa ctccctctca gaagcaggag
1441 ctgatagact tggacaagga agtatatcct ttaacttccc tcagatcact ctttggcaac
1501 gacccctcgt cgaaataa
//
last modified: Tue May 31 10:56 2022