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LOCUS	    EU241980		    1518 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2923 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241980
VERSION     EU241980.1 GI:166025543
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1518)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1518)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1518
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2923"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1518
		     /gene="gag"
     CDS	     1..1518
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78082.1"
		     /db_xref="GI:166025544"
		     /translation="MGARASVLSGGELDRWEKIRLRPGGKKKYKLKHIVWASRELERF
		     AVNPGLLETSAGCRQILEQLQPSLQTGSEELKSLYNTVATLYCVHQKIDVKDTKEALD
		     KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
		     HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPTSILDIKQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLVQNSNPDCKTIL
		     KALGPAATLEEMMTACQGVGGPSHKARVLAEAMSQATNSTXIMMQKGNFRNQRKXVKC
		     FNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKXCTERQANFLGKIWPSHKGRPGNFLQ
		     SXPEPSAPSAPPAESFRFGEETKTPSQKQELIDLDKEVYPLTSLRSLFGNDPSSK"
BASE COUNT	563 a	 292 c	  362 g    295 t      6 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataggtggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaaatataaa ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat ttgcagttaa tcctggccta ttagaaacat cagcaggctg tagacaaata 
     181 ctggaacagc tacaaccatc ccttcagaca ggatcagaag aacttaaatc attatataat 
     241 acagtagcaa ccctctattg tgtgcatcaa aagatagatg taaaagacac caaggaagct 
     301 ttagataaga tagaggaaga gcaaaacaaa agtaagaaaa aagcacagca agcggcagct 
     361 gacacaggaa acagcagcca ggtcagccaa aattacccta tagtgcagaa tctccagggg 
     421 caaatggtac atcaagccat atcacctaga actttaaatg catgggtaaa agtagtagaa 
     481 gaaaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggagccacc 
     541 ccacaagatt taaayaccat gctaaacaca gtggggggac atcaggcagc catgcagatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gattgcatcc agtgcatgca 
     661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact 
     721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa 
     781 atctataaaa gatggataat cctgggatta aataaaatag taaggatgta tagtcctacc 
     841 agcattctgg atataaaaca aggaccaaag gaacccttta gagactatgt agaccggttc 
     901 tataaaactc taagagccga gcaagcttca caggaggtaa aaaattggat gacagaaacc 
     961 ttgttggtcc aaaattcgaa cccagattgt aagactattt taaaagcatt gggaccagca 
    1021 gctaccctag aagaaatgat gacagcatgt cagggagtgg gaggacccag ccataaagca 
    1081 agggttttgg cggaagcaat gagccaagca acaaattcaa ctrccataat gatgcagaaa 
    1141 ggtaatttta gaaaccaaag aaagvytgtt aagtgtttca attgtggcaa agaaggacac 
    1201 atagccagaa attgcagggc ccctaggaaa aggggctgtt ggaaatgtgg aaaggaagga 
    1261 caccaaatga aagaktgtac tgaaagacag gctaattttt tagggaagat ctggccttcc 
    1321 cacaaaggaa ggccagggaa ttttctccag agcrgaccag aaccatcagc accatcagcc 
    1381 ccaccagcag agagcttcag gtttggggag gagacaaaaa ctccctctca gaagcaggag 
    1441 ctgatagact tggacaagga agtatatcct ttaacttccc tcagatcact ctttggcaac 
    1501 gacccctcgt cgaaataa
//
last modified: Tue May 31 10:56 2022


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