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LOCUS	    EU241954		    1518 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2897 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241954
VERSION     EU241954.1 GI:166025491
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1518)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1518)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1518
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2897"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1518
		     /gene="gag"
     CDS	     1..1518
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78056.1"
		     /db_xref="GI:166025492"
		     /translation="MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERF
		     AVNPGLLETSXGCRQILGQLQPSLQTGSEELRSLFNTVAVLYCVHQKIDVKDTKEALX
		     KIEEEQNKCKKKAQQAXADTGNSSQVSQNYPIVQNMQGQMVHQALSPRTLNAWVKVIE
		     EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
		     QAGPVAPGQIREPRGSDIAGTTSNLQEQIAWMTHNPPIPVGEIYKRWIILGLNKIVRM
		     YSPVSILDIXQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLIQNANPDCKTIL
		     KALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAAIMMQRGNFKNQRKTVKC
		     FNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
		     SRPEQSRPEPTAPPAESFSFGEETTTPPQKQEPIDKELYPLASLRSLFGNDPSSQ"
BASE COUNT	547 a	 294 c	  370 g    286 t     21 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataaatggga aaaaattcgg 
      61 ttaaggccag ggggaaagaa aaaatatcaa ttaaaacata tagtatgggc aagcagggag 
     121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagmaggctg tagacaaata 
     181 ctgggacagy tacaaccatc ccttcagaca ggatcagaag arcttagatc attatttaat 
     241 acagtagcag tcctctattg tgtgcatcaa aagatagatg taaaagacac caaggaagct 
     301 ttagadaaga tagaggaaga gcaaaacaaa tgtaagaaaa aagcacagca agcaycagct 
     361 gacacaggaa acagcagcca ggtcagccaa aattacccaa tagtgcagaa catgcagggg 
     421 caaatggtac atcaggccct atcacctaga actctaaatg catgggtaaa agtaatagar 
     481 gagaaggctt ttagcccaga agtaataccc atgtttacag cattatcaga aggagccacc 
     541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gattgcatcc agtgcaggca 
     661 gggcctgttg caccaggcca gataagagaa ccaagrggaa gtgacatagc aggractact 
     721 agtaaccttc aggaacaaat agcatggatg acacataacc cacctatccc agtrggagag 
     781 atctataaaa gatggataat cctggggtta aataaaatag taagratgta tagccctgtc 
     841 agcattytgg acataaraca aggaccaaag gaacccttta gagattatgt agaycggttc 
     901 tataaaactc taagagccga gcaagcytca caggaggtaa aaaattggat gacagaaacc 
     961 ttgttgatcc aaaatgcgaa tccagattgt aagaccattt taaaagcatt rggaccagga 
    1021 gctacactag aagaaatgat gacagcatgt cagggagtag gaggacccgg ccataaagca 
    1081 agggttttgg cagaagcaat gagccaagta acaaattcag ctgctataat gatgcagagg 
    1141 ggcaatttta agaaccaaag aaagactgtt aagtgtttca attgtggyaa agaagggcac 
    1201 atagccagaa attgcagggc ccctaggaaa aggggctgct ggaartgtgg aaaggaagga 
    1261 caccaaatga aagattgtac tgagagacag gctaattttt tagggaarat ctggccttcc 
    1321 cacaagggra ggccagggaa ttttcttcag agcagaccag agcagagcag accagagcca 
    1381 acagcccctc cggcagagag cttcagcttt ggggargaga caacaactcc ccctcagaag 
    1441 caggagccga tagacaagga actgtatcct ttagcttccc tcagatcact ctttggcaac 
    1501 gacccctcgt cmcaataa
//
last modified: Tue May 31 10:56 2022


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