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LOCUS EU241954 1518 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2897 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241954
VERSION EU241954.1 GI:166025491
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1518)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1518)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1518
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2897"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1518
/gene="gag"
CDS 1..1518
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78056.1"
/db_xref="GI:166025492"
/translation="MGARASVLSGGELDKWEKIRLRPGGKKKYQLKHIVWASRELERF
AVNPGLLETSXGCRQILGQLQPSLQTGSEELRSLFNTVAVLYCVHQKIDVKDTKEALX
KIEEEQNKCKKKAQQAXADTGNSSQVSQNYPIVQNMQGQMVHQALSPRTLNAWVKVIE
EKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRLHPV
QAGPVAPGQIREPRGSDIAGTTSNLQEQIAWMTHNPPIPVGEIYKRWIILGLNKIVRM
YSPVSILDIXQGPKEPFRDYVDRFYKTLRAEQASQEVKNWMTETLLIQNANPDCKTIL
KALGPGATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSAAIMMQRGNFKNQRKTVKC
FNCGKEGHIARNCRAPRKRGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
SRPEQSRPEPTAPPAESFSFGEETTTPPQKQEPIDKELYPLASLRSLFGNDPSSQ"
BASE COUNT 547 a 294 c 370 g 286 t 21 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagaattag ataaatggga aaaaattcgg
61 ttaaggccag ggggaaagaa aaaatatcaa ttaaaacata tagtatgggc aagcagggag
121 ctagaacgat tcgcagttaa tcctggcctg ttagaaacat cagmaggctg tagacaaata
181 ctgggacagy tacaaccatc ccttcagaca ggatcagaag arcttagatc attatttaat
241 acagtagcag tcctctattg tgtgcatcaa aagatagatg taaaagacac caaggaagct
301 ttagadaaga tagaggaaga gcaaaacaaa tgtaagaaaa aagcacagca agcaycagct
361 gacacaggaa acagcagcca ggtcagccaa aattacccaa tagtgcagaa catgcagggg
421 caaatggtac atcaggccct atcacctaga actctaaatg catgggtaaa agtaatagar
481 gagaaggctt ttagcccaga agtaataccc atgtttacag cattatcaga aggagccacc
541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gattgcatcc agtgcaggca
661 gggcctgttg caccaggcca gataagagaa ccaagrggaa gtgacatagc aggractact
721 agtaaccttc aggaacaaat agcatggatg acacataacc cacctatccc agtrggagag
781 atctataaaa gatggataat cctggggtta aataaaatag taagratgta tagccctgtc
841 agcattytgg acataaraca aggaccaaag gaacccttta gagattatgt agaycggttc
901 tataaaactc taagagccga gcaagcytca caggaggtaa aaaattggat gacagaaacc
961 ttgttgatcc aaaatgcgaa tccagattgt aagaccattt taaaagcatt rggaccagga
1021 gctacactag aagaaatgat gacagcatgt cagggagtag gaggacccgg ccataaagca
1081 agggttttgg cagaagcaat gagccaagta acaaattcag ctgctataat gatgcagagg
1141 ggcaatttta agaaccaaag aaagactgtt aagtgtttca attgtggyaa agaagggcac
1201 atagccagaa attgcagggc ccctaggaaa aggggctgct ggaartgtgg aaaggaagga
1261 caccaaatga aagattgtac tgagagacag gctaattttt tagggaarat ctggccttcc
1321 cacaagggra ggccagggaa ttttcttcag agcagaccag agcagagcag accagagcca
1381 acagcccctc cggcagagag cttcagcttt ggggargaga caacaactcc ccctcagaag
1441 caggagccga tagacaagga actgtatcct ttagcttccc tcagatcact ctttggcaac
1501 gacccctcgt cmcaataa
//
last modified: Tue May 31 10:56 2022