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LOCUS EU241939 1521 bp RNA linear VRL 31-MAY-2008
DEFINITION HIV-1 isolate BCCFE_HOMER_HIV_GAG_2882 from Canada gag protein
(gag) gene, complete cds
ACCESSION EU241939
VERSION EU241939.1 GI:166025461
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1521)
Show all sequences for reference 1
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
Harrigan,P.R.
TITLE Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
their association with viral load in chronic untreated infection.
JOURNAL AIDS. 22(11); 1277-86 (2008)
PUBMED 18580606
REFERENCE 2 (bases 1 to 1521)
Show all sequences for reference 2
AUTHORS Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
Heckerman,D. and Harrigan,R.
TITLE Direct Submission
JOURNAL Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
University of British Columbia, 613-1081 Burrard Street, Vancouver,
BC V6Z 1Y6, Canada
FEATURES Location/Qualifiers
source 1..1521
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="BCCFE_HOMER_HIV_GAG_2882"
/isolation_source="plasma from antiretroviral naive,
chronically HIV-infected individual"
/db_xref="taxon:11676"
/country="Canada: British Columbia"
gene 1..1521
/gene="gag"
CDS 1..1521
/gene="gag"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABY78041.1"
/db_xref="GI:166025462"
/translation="MGARASVLSGGDLDRWEKIRLRPGGKKKYRLKHJVWASRELERF
AVNPGLLETAKGCRQILEQLQPXLQTGSEELRSLYNTVATLYCVHXKIEIKDTKEAVD
KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPV
HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTIL
KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC
FNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
NRXELTARPEPTAPPAESFRFGEETXTPSQKQEPXDXXLYPLASLRSLFGNDPSSQ"
BASE COUNT 551 a 300 c 371 g 284 t 15 other
ORIGIN
1 atgggtgcga gagcgtcagt attaagcggg ggagatttgg atagatggga gaaaattcgg
61 ttacggccag ggggaaagaa aaaatataga ctaaaacatm ttgtatgggc aagcagggag
121 ctagaacgat tcgcagttaa ccctggcctt ttagaaacag caaagggmtg tagacaaata
181 ytggaacagc tacagccckc ccttcagaca ggatcagaag aacttagatc attatataat
241 acagtagcaa ccctctattg tgtgcatcwm aagatagaga taaaagacac caaggaagct
301 gtagataaga tagaggaaga gcaaaacaaa agtaagaaaa aggcacagca agcagcagct
361 gacacaggaa acagcagcca ggtcagccaa aattacccta tagtacagaa cctccagggg
421 caaatggtac atcaagccat atcacctaga actttaaatg catgggtaaa agtagtagaa
481 gagaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggagccacc
541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc catgcaaatg
601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gagtgcatcc agtgcatgca
661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact
721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa
781 atctataaaa gatggataat cctgggatta aataaaatag taagaatgta tagccctacc
841 agcattttgg acataagaca aggaccaaag gaacctttta gagattatgt agaccggttc
901 tataaaactc tgagagccga gcaagctaca caggaggtaa aaaattggat gacagaaacc
961 ttgttggtcc aaaatgcaaa cccagattgt aagactatct taaaagcatt gggaccagca
1021 gctacactag aagaaatgat gacagcatgt cagggagtag ggggacccgg ccataaagca
1081 agagttttgg ctgaagcaat gagccaggta acaaattcag ctaccataat gatgcagaga
1141 ggcaatttta ggaatcaaag aaagactgtt aaatgtttca attgtggcag agaagggcac
1201 atagcwaaaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaagaagga
1261 caccaaatga aggactgtac tgagagacag gctaattttt tagggaaaat ctggccttcc
1321 cacaagggaa ggccagggaa ttttcttcag aacagaycag agctgacagc ccgaccagag
1381 ccgacagccc caccagcaga gagcttcagg tttggggaag agacarcaac tccmtctcag
1441 aagcaggagc cgrtagacra gramctrtat cccttagcct ccctcagatc actctttggc
1501 aacgacccct cgtcacaata a
//
last modified: Tue May 31 10:56 2022