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LOCUS	    EU241939		    1521 bp    RNA     linear	VRL 31-MAY-2008
DEFINITION  HIV-1 isolate BCCFE_HOMER_HIV_GAG_2882 from Canada gag protein
	    (gag) gene, complete cds
ACCESSION   EU241939
VERSION     EU241939.1 GI:166025461
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1521)
            Show all sequences for reference 1
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Walker,B., Heckerman,D. and
	    Harrigan,P.R.
  TITLE     Human leukocyte antigen-specific polymorphisms in HIV-1 Gag and
	    their association with viral load in chronic untreated infection.
  JOURNAL   AIDS. 22(11); 1277-86 (2008)
  PUBMED    18580606
REFERENCE   2 (bases 1 to 1521)
            Show all sequences for reference 2
  AUTHORS   Brumme,Z.L., Tao,I., Szeto,S., Brumme,C.J., Carlson,J.M., Chan,D.,
	    Kadie,C., Frahm,N., Brander,C., Hogg,R.S., Walker,B.D.,
	    Heckerman,D. and Harrigan,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (23-OCT-2007) BC Centre for Excellence in HIV/AIDS,
	    University of British Columbia, 613-1081 Burrard Street, Vancouver,
	    BC V6Z 1Y6, Canada
FEATURES             Location/Qualifiers
     source	     1..1521
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="BCCFE_HOMER_HIV_GAG_2882"
		     /isolation_source="plasma from antiretroviral naive,
		     chronically HIV-infected individual"
		     /db_xref="taxon:11676"
		     /country="Canada: British Columbia"
     gene	     1..1521
		     /gene="gag"
     CDS	     1..1521
		     /gene="gag"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABY78041.1"
		     /db_xref="GI:166025462"
		     /translation="MGARASVLSGGDLDRWEKIRLRPGGKKKYRLKHJVWASRELERF
		     AVNPGLLETAKGCRQILEQLQPXLQTGSEELRSLYNTVATLYCVHXKIEIKDTKEAVD
		     KIEEEQNKSKKKAQQAAADTGNSSQVSQNYPIVQNLQGQMVHQAISPRTLNAWVKVVE
		     EKAFSPEVIPMFSALSEGATPQDLNTMLNTVGGHQAAMQMLKETINEEAAEWDRVHPV
		     HAGPIAPGQMREPRGSDIAGTTSTLQEQIGWMTNNPPIPVGEIYKRWIILGLNKIVRM
		     YSPTSILDIRQGPKEPFRDYVDRFYKTLRAEQATQEVKNWMTETLLVQNANPDCKTIL
		     KALGPAATLEEMMTACQGVGGPGHKARVLAEAMSQVTNSATIMMQRGNFRNQRKTVKC
		     FNCGREGHIAKNCRAPRKKGCWKCGKEGHQMKDCTERQANFLGKIWPSHKGRPGNFLQ
		     NRXELTARPEPTAPPAESFRFGEETXTPSQKQEPXDXXLYPLASLRSLFGNDPSSQ"
BASE COUNT	551 a	 300 c	  371 g    284 t     15 other
ORIGIN
       1 atgggtgcga gagcgtcagt attaagcggg ggagatttgg atagatggga gaaaattcgg 
      61 ttacggccag ggggaaagaa aaaatataga ctaaaacatm ttgtatgggc aagcagggag 
     121 ctagaacgat tcgcagttaa ccctggcctt ttagaaacag caaagggmtg tagacaaata 
     181 ytggaacagc tacagccckc ccttcagaca ggatcagaag aacttagatc attatataat 
     241 acagtagcaa ccctctattg tgtgcatcwm aagatagaga taaaagacac caaggaagct 
     301 gtagataaga tagaggaaga gcaaaacaaa agtaagaaaa aggcacagca agcagcagct 
     361 gacacaggaa acagcagcca ggtcagccaa aattacccta tagtacagaa cctccagggg 
     421 caaatggtac atcaagccat atcacctaga actttaaatg catgggtaaa agtagtagaa 
     481 gagaaggctt tcagcccaga agtaataccc atgttttcag cattatcaga aggagccacc 
     541 ccacaagatt taaacaccat gctaaacaca gtggggggac atcaagcagc catgcaaatg 
     601 ttaaaagaga ccatcaatga ggaagctgca gaatgggata gagtgcatcc agtgcatgca 
     661 gggcctattg caccaggcca gatgagagaa ccaaggggaa gtgacatagc aggaactact 
     721 agtacccttc aggaacaaat aggatggatg acaaataatc cacctatccc agtaggagaa 
     781 atctataaaa gatggataat cctgggatta aataaaatag taagaatgta tagccctacc 
     841 agcattttgg acataagaca aggaccaaag gaacctttta gagattatgt agaccggttc 
     901 tataaaactc tgagagccga gcaagctaca caggaggtaa aaaattggat gacagaaacc 
     961 ttgttggtcc aaaatgcaaa cccagattgt aagactatct taaaagcatt gggaccagca 
    1021 gctacactag aagaaatgat gacagcatgt cagggagtag ggggacccgg ccataaagca 
    1081 agagttttgg ctgaagcaat gagccaggta acaaattcag ctaccataat gatgcagaga 
    1141 ggcaatttta ggaatcaaag aaagactgtt aaatgtttca attgtggcag agaagggcac 
    1201 atagcwaaaa attgcagggc ccctaggaaa aagggctgtt ggaaatgtgg aaaagaagga 
    1261 caccaaatga aggactgtac tgagagacag gctaattttt tagggaaaat ctggccttcc 
    1321 cacaagggaa ggccagggaa ttttcttcag aacagaycag agctgacagc ccgaccagag 
    1381 ccgacagccc caccagcaga gagcttcagg tttggggaag agacarcaac tccmtctcag 
    1441 aagcaggagc cgrtagacra gramctrtat cccttagcct ccctcagatc actctttggc 
    1501 aacgacccct cgtcacaata a
//
last modified: Tue May 31 10:56 2022


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