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LOCUS EU236460 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 34393 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236460
VERSION EU236460.1 GI:159171203
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="34393"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96039.1"
/db_xref="GI:159171204"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKP
KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKSLTEVI
XLTXEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQDYGQWTYQIYQEPFKNLKT
GKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEA"
BASE COUNT 607 a 252 c 304 g 328 t 6 other
ORIGIN
1 cctcaaatca ctctttggca rcgacccctc gtcacaataa agataggggg gcagctaaag
61 gaagctctwt tagatacagg agcagatgat acagtattag aagacatgac tttaccagga
121 agatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagataccca tagaaatctg tgggcataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctattg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg
421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcag ctaggaatac cacatcccgc agggttaaaa
601 aagaacaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttta gaaagtatac tgcatttacc atacctagtg taaacaatga gacaccagga
721 actagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaga atccagaaat agtcatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttaagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ctggatggga tacgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac ccagggatta aagtaaggca attatgtaaa
1141 ctccttaggg gaaccaaatc actaacagaa gtaataycac taacaraaga agcagagcta
1201 gaactggcag aaaacaggga gattctaaaa gagccagtac atggagtgta ttatgaccca
1261 tcaaaagayt taatagcaga aatacagaag caggattatg gacaatggac atatcaaatt
1321 taccaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaatgag gggtgcccac
1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga aagcatagtg
1441 atatggggaa agacccctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022