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LOCUS	    EU236460		    1497 bp    RNA     linear	VRL 03-APR-2008
DEFINITION  HIV-1 isolate 34393 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   EU236460
VERSION     EU236460.1 GI:159171203
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Episodic sexual transmission of HIV revealed by molecular
	    phylodynamics
  JOURNAL   PLoS Med. 5 (3), E50 (2008)
  PUBMED    18351795
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2007) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="34393"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABW96039.1"
		     /db_xref="GI:159171204"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMTLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGTRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYPGIKVRQLCKLLRGTKSLTEVI
		     XLTXEAELELAENREILKEPVHGVYYDPSKDLIAEIQKQDYGQWTYQIYQEPFKNLKT
		     GKYARMRGAHTNDVKQLTEAVQKIATESIVIWGKTPKFKLPIQKETWEA"
BASE COUNT	607 a	 252 c	  304 g    328 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca rcgacccctc gtcacaataa agataggggg gcagctaaag 
      61 gaagctctwt tagatacagg agcagatgat acagtattag aagacatgac tttaccagga 
     121 agatggaaac caaaaatgat aggrggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaaatctg tgggcataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctattg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccaatattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcag ctaggaatac cacatcccgc agggttaaaa 
     601 aagaacaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttta gaaagtatac tgcatttacc atacctagtg taaacaatga gacaccagga 
     721 actagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaga atccagaaat agtcatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttaagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ctggatggga tacgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac ccagggatta aagtaaggca attatgtaaa 
    1141 ctccttaggg gaaccaaatc actaacagaa gtaataycac taacaraaga agcagagcta 
    1201 gaactggcag aaaacaggga gattctaaaa gagccagtac atggagtgta ttatgaccca 
    1261 tcaaaagayt taatagcaga aatacagaag caggattatg gacaatggac atatcaaatt 
    1321 taccaagagc catttaaaaa tctgaaaaca ggaaaatatg caagaatgag gggtgcccac 
    1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagccacaga aagcatagtg 
    1441 atatggggaa agacccctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022


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