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LOCUS EU236450 1497 bp RNA linear VRL 03-APR-2008
DEFINITION HIV-1 isolate 9505 from United Kingdom pol protein (pol) gene,
partial cds
ACCESSION EU236450
VERSION EU236450.1 GI:159171164
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1497)
Show all sequences for reference 1
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Episodic sexual transmission of HIV revealed by molecular
phylodynamics
JOURNAL PLoS Med. 5 (3), E50 (2008)
PUBMED 18351795
REFERENCE 2 (bases 1 to 1497)
Show all sequences for reference 2
AUTHORS Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2007) Institute for Evolutionary Biology,
University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
Scotland
FEATURES Location/Qualifiers
source 1..1497
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="9505"
/db_xref="taxon:11676"
/country="United Kingdom"
gene <1..>1497
/gene="pol"
CDS <1..>1497
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABW96029.1"
/db_xref="GI:159171165"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMXLPGRWKP
KMIGGIGGFIKVXQYDQXPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
LVIYQYMDDLYVGSDLEIGQHRTKIEELRZHLLRWGFTTPDKKHQKXPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
XLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGYGQWTYQIYQEPFKNLKT
GKYAXMRGAHTNDVKQLTEAVQKIXTESIXIWGKTPKFKLPIQKETWEA"
BASE COUNT 593 a 239 c 312 g 327 t 26 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacagtaa agataggggg gcaactaaag
61 gaagctctat tagacacagg agcagatgat acagtattag aagacatgma tttgccagga
121 agatggaarc caaaaatgat agggggaatt ggaggtttta tcaaagtaar acagtatgat
181 cagrtaccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taatwggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty
361 aaacaatggc cattgacaga agaaaarata aaagcattag tagaaatttg tacagaaatg
421 gaaaaagaag ggaaaatttc aaarattggg cctgaaaayc catacaatac tccagtrttt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat
661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 aytagatatc agtacaatgt gctgccacag ggatggaagg gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaytt agtgatatat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaay tgagasagca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagamc ctccmttcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgytgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat gcaggratta aagtaaarca attatgcaaa
1141 ctccttaggg gaactaaagc actaacagaa gtaatasmac tgacagaaga agcagagyta
1201 gaactagcag aaaacaggga gattctaaaa gaaccagtac atggagtata ttatgaccca
1261 tcaaaagact tggtagcaga aatacagaaa caggggtacg gccaatggac atatcaaatt
1321 tatcaagagc catttaaaaa tctgaaaaca ggaaagtatg caaraatgag rggtgcccac
1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagycacaga aagcatarta
1441 atatggggaa agactcctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022