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LOCUS	    EU236450		    1497 bp    RNA     linear	VRL 03-APR-2008
DEFINITION  HIV-1 isolate 9505 from United Kingdom pol protein (pol) gene,
	    partial cds
ACCESSION   EU236450
VERSION     EU236450.1 GI:159171164
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1497)
            Show all sequences for reference 1
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Episodic sexual transmission of HIV revealed by molecular
	    phylodynamics
  JOURNAL   PLoS Med. 5 (3), E50 (2008)
  PUBMED    18351795
REFERENCE   2 (bases 1 to 1497)
            Show all sequences for reference 2
  AUTHORS   Lewis,F., Hughes,G.J., Rambaut,A., Pozniak,A. and Leigh Brown,A.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2007) Institute for Evolutionary Biology,
	    University of Edinburgh, West Mains Road, Edinburgh EH9 3JT,
	    Scotland
FEATURES             Location/Qualifiers
     source	     1..1497
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="9505"
		     /db_xref="taxon:11676"
		     /country="United Kingdom"
     gene	     <1..>1497
		     /gene="pol"
     CDS	     <1..>1497
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABW96029.1"
		     /db_xref="GI:159171165"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEDMXLPGRWKP
		     KMIGGIGGFIKVXQYDQXPIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGXRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     LVIYQYMDDLYVGSDLEIGQHRTKIEELRZHLLRWGFTTPDKKHQKXPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGTKALTEVI
		     XLTEEAELELAENREILKEPVHGVYYDPSKDLVAEIQKQGYGQWTYQIYQEPFKNLKT
		     GKYAXMRGAHTNDVKQLTEAVQKIXTESIXIWGKTPKFKLPIQKETWEA"
BASE COUNT	593 a	 239 c	  312 g    327 t     26 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacagtaa agataggggg gcaactaaag 
      61 gaagctctat tagacacagg agcagatgat acagtattag aagacatgma tttgccagga 
     121 agatggaarc caaaaatgat agggggaatt ggaggtttta tcaaagtaar acagtatgat 
     181 cagrtaccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taatwggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty 
     361 aaacaatggc cattgacaga agaaaarata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaagaag ggaaaatttc aaarattggg cctgaaaayc catacaatac tccagtrttt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 aytagatatc agtacaatgt gctgccacag ggatggaagg gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccagaytt agtgatatat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaay tgagasagca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagamc ctccmttcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgytgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcaggratta aagtaaarca attatgcaaa 
    1141 ctccttaggg gaactaaagc actaacagaa gtaatasmac tgacagaaga agcagagyta 
    1201 gaactagcag aaaacaggga gattctaaaa gaaccagtac atggagtata ttatgaccca 
    1261 tcaaaagact tggtagcaga aatacagaaa caggggtacg gccaatggac atatcaaatt 
    1321 tatcaagagc catttaaaaa tctgaaaaca ggaaagtatg caaraatgag rggtgcccac 
    1381 actaatgatg taaaacaatt aacagaggca gtgcaaaaaa tagycacaga aagcatarta 
    1441 atatggggaa agactcctaa atttaaacta cccatacaaa aagaaacatg ggaagca
//
last modified: Tue May 31 10:56 2022


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