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LOCUS	    EU177950		    1283 bp    RNA     linear	VRL 30-SEP-2008
DEFINITION  HIV-1 isolate GH_086 from Ghana pol protein (pol) gene, partial cds
ACCESSION   EU177950
VERSION     EU177950.1 GI:163963781
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1283)
            Show all sequences for reference 1
  AUTHORS   Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
	    Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
	    Thomson,M. and Najera,R.
  TITLE     High prevalence of unique recombinant forms of HIV-1 in Ghana:
	    molecular epidemiology from an antiretroviral resistance study.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
  PUBMED    18645511
REFERENCE   2 (bases 1 to 1283)
            Show all sequences for reference 2
  AUTHORS   Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
	    Thomson,M.M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1283
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH_086"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /note="subtype: CRF02_AG; acronym: HIV-1"
     gene	     <1..>1283
		     /gene="pol"
     CDS	     <1..>1283
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABY50815.1"
		     /db_xref="GI:163963782"
		     /translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEITLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
		     SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICKDMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDPDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     PLTEEAELELAENREILKEPVHGVYYDPTKDLIAE"
BASE COUNT	510 a	 204 c	  267 g    293 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta gtcacagtaa aaataggggg acagctaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataac tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactta tagaaatttg tgggaaaagg gccataggta cagtattagt aggacctaca 
     241 cctatcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagttcta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagagatttg taaagacatg 
     421 gaaaargaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaay 
     541 aagagaactc aagayttctg ggaggtccaa ttaggaatac ctcatccygc gggattraaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tccattagac 
     661 ccagatttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg 
     721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gcaagcatga caaaaatttt agagcccttt agaacaaaaa atccagagat agtgatctac 
     841 caatatatgg atgatttata tgtaggatct gacttagaga tagggcagca tagagcaaag 
     901 atagaggaat taagagaaca tctaytgaaa tggggactya ccacaccaga caaaaaacat 
     961 cagaaagaac cyccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagccyatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg 
    1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaaagca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat atagtaccac tgactgagga agcagaatta 
    1201 gaattggcag aaaacaggga aattctaaaa gaacctgtac atggggtata ttatgaccca 
    1261 acaaaagact taatagcaga aat
//
last modified: Tue May 31 10:56 2022


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