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LOCUS EU177950 1283 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_086 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177950
VERSION EU177950.1 GI:163963781
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1283)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1283)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1283
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_086"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1283
/gene="pol"
CDS <1..>1283
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50815.1"
/db_xref="GI:163963782"
/translation="PQITLWQRPLVTVKIGGQLIEALLDTGADDTVLEEITLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKRAIGTVLVGPTPINIIGRNMLTQIGCTLNFPIS
SIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICKDMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDPDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIQLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
PLTEEAELELAENREILKEPVHGVYYDPTKDLIAE"
BASE COUNT 510 a 204 c 267 g 293 t 9 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccctta gtcacagtaa aaataggggg acagctaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataac tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactta tagaaatttg tgggaaaagg gccataggta cagtattagt aggacctaca
241 cctatcaaca taattggacg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagttcta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagagatttg taaagacatg
421 gaaaargaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaay
541 aagagaactc aagayttctg ggaggtccaa ttaggaatac ctcatccygc gggattraaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tccattagac
661 ccagatttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccaggg
721 attagatatc aatacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag
781 gcaagcatga caaaaatttt agagcccttt agaacaaaaa atccagagat agtgatctac
841 caatatatgg atgatttata tgtaggatct gacttagaga tagggcagca tagagcaaag
901 atagaggaat taagagaaca tctaytgaaa tggggactya ccacaccaga caaaaaacat
961 cagaaagaac cyccattcct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagccyatac agctgccaga aaaagacagc tggactgtca atgatataca gaaattagtg
1081 ggaaaattaa attgggcaag tcagatttat gcaggaatta aagtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat atagtaccac tgactgagga agcagaatta
1201 gaattggcag aaaacaggga aattctaaaa gaacctgtac atggggtata ttatgaccca
1261 acaaaagact taatagcaga aat
//
last modified: Tue May 31 10:56 2022