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LOCUS EU177915 1388 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_041 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177915
VERSION EU177915.1 GI:163963711
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1388)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1388)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1388
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_041"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG; acronym: HIV-1"
gene <1..>1388
/gene="pol"
CDS <1..>1388
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50780.1"
/db_xref="GI:163963712"
/translation="PQITLWQRPLVTAKIGGQLIEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICMEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDPDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQTIQLPEKEHWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
TLTEEAELELAENREILKEPVHGVYYDPXKDLIAEIQKQGQDQWTYQIYQEPFKNLKT
GKYAKKRSAHTN"
BASE COUNT 559 a 229 c 284 g 308 t 8 other
ORIGIN
1 cctcaaatca ctctttggca gcgaccctta gtcacagcaa aaataggggg acagctaata
61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactta tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca
241 cctgtcaaca taattggrcg aaatatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tatggagatg
421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaacac tccagtattt
481 gcaataaaga aaaaggatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc tggattaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat
661 ccagacttta gaaagtatac tgcattcact atacctagta taaataatga gacaccrggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag
781 gcaagcatga caaaaatctt agagcccttt agaacaaaaa atccagagat agtaatctac
841 caatacatgg atgatttata tgtaggatca gacttagaaa tagggcagca tagagcaaaa
901 atagargagt tgagagaaca tytactgara tggggattca ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagactatac agctgcccga aaaggagcac tggactgtca atgatataca raaactagtg
1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagat atagtaacac tgactgagga agcagagtta
1201 gaattggcag agaacaggga aatyctaaaa gaacctgtac atggggtata ttatgaccca
1261 rcaaaagact taatagcaga aatacagaaa caagggcaag accaatggac atatcaaatt
1321 tatcaagaac catttaaaaa tctaaaaaca ggaaaatatg caaaaaagag gtctgcccac
1381 actaatga
//
last modified: Tue May 31 10:56 2022