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LOCUS	    EU177915		    1388 bp    RNA     linear	VRL 30-SEP-2008
DEFINITION  HIV-1 isolate GH_041 from Ghana pol protein (pol) gene, partial cds
ACCESSION   EU177915
VERSION     EU177915.1 GI:163963711
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1388)
            Show all sequences for reference 1
  AUTHORS   Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
	    Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
	    Thomson,M. and Najera,R.
  TITLE     High prevalence of unique recombinant forms of HIV-1 in Ghana:
	    molecular epidemiology from an antiretroviral resistance study.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
  PUBMED    18645511
REFERENCE   2 (bases 1 to 1388)
            Show all sequences for reference 2
  AUTHORS   Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
	    Thomson,M.M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1388
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH_041"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /note="subtype: CRF02_AG; acronym: HIV-1"
     gene	     <1..>1388
		     /gene="pol"
     CDS	     <1..>1388
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABY50780.1"
		     /db_xref="GI:163963712"
		     /translation="PQITLWQRPLVTAKIGGQLIEALLDTGADDTVLEEINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTDICMEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDPDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRTKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLXWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQTIQLPEKEHWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTDIV
		     TLTEEAELELAENREILKEPVHGVYYDPXKDLIAEIQKQGQDQWTYQIYQEPFKNLKT
		     GKYAKKRSAHTN"
BASE COUNT	559 a	 229 c	  284 g    308 t      8 other
ORIGIN
       1 cctcaaatca ctctttggca gcgaccctta gtcacagcaa aaataggggg acagctaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aagaaataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactta tagaaatttg tggaaaaaag gccataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggrcg aaatatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt gccagtaaaa ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagacatttg tatggagatg 
     421 gaaaaggaag gaaaaatttc aaaaataggg cctgaaaatc catacaacac tccagtattt 
     481 gcaataaaga aaaaggatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagaactc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc tggattaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcccttagat 
     661 ccagacttta gaaagtatac tgcattcact atacctagta taaataatga gacaccrggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gcaagcatga caaaaatctt agagcccttt agaacaaaaa atccagagat agtaatctac 
     841 caatacatgg atgatttata tgtaggatca gacttagaaa tagggcagca tagagcaaaa 
     901 atagargagt tgagagaaca tytactgara tggggattca ccacaccaga caaaaaacat 
     961 cagaaagaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagactatac agctgcccga aaaggagcac tggactgtca atgatataca raaactagtg 
    1081 ggaaaactaa attgggcaag tcagatttat gcaggaatta aagtaaagca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagat atagtaacac tgactgagga agcagagtta 
    1201 gaattggcag agaacaggga aatyctaaaa gaacctgtac atggggtata ttatgaccca 
    1261 rcaaaagact taatagcaga aatacagaaa caagggcaag accaatggac atatcaaatt 
    1321 tatcaagaac catttaaaaa tctaaaaaca ggaaaatatg caaaaaagag gtctgcccac 
    1381 actaatga
//
last modified: Tue May 31 10:56 2022


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