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LOCUS EU177894 1275 bp RNA linear VRL 30-SEP-2008
DEFINITION HIV-1 isolate GH_017 from Ghana pol protein (pol) gene, partial cds
ACCESSION EU177894
VERSION EU177894.1 GI:163963669
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1275)
Show all sequences for reference 1
AUTHORS Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
Thomson,M. and Najera,R.
TITLE High prevalence of unique recombinant forms of HIV-1 in Ghana:
molecular epidemiology from an antiretroviral resistance study.
JOURNAL J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
PUBMED 18645511
REFERENCE 2 (bases 1 to 1275)
Show all sequences for reference 2
AUTHORS Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
Thomson,M.M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1275
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="GH_017"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="Ghana"
/note="subtype: CRF02_AG/A3; acronym: HIV-1"
gene <1..>1275
/gene="pol"
CDS <1..>1275
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABY50759.1"
/db_xref="GI:163963670"
/translation="PQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEGINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKEAIGTVLXGPTPVNIIGRNMLTQIGCTLNFPIS
PIETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRTKNPE
IVIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVV
ALTEEAELELAENREILKDPVHGVYYDPSKDLV"
BASE COUNT 502 a 204 c 270 g 293 t 6 other
ORIGIN
1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagctaata
61 gaagccctat tagacacagg agcagatgat acagtattag aaggaataaa tttaccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagatactta tagaaatttg tggaaaagag gccataggta cagtattart aggacctacg
241 cctgtcaaca taattggacg aaacatgttg actcagattg gttgtacttt aaattttcca
301 attagtccta ttgaaactgt accagtaaca ttaaagccag gaatggatgg cccaaaggtt
361 aaacaatggc cattgacaga agaaaaaata aaggcattaa cagaaatttg tacagagatg
421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat
541 aagagractc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc gggattaaar
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt accyctagat
661 aaagacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccagga
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag
781 gcaagcatga caaaaatttt agagccctat agaacaaaaa atccagagat agtgatctac
841 caatatatgg atgatctata tgtaggatct gatttagaaa tagggcagca tagaacaaaa
901 atagaggagc tgagagctca tctaytgaaa tggggattaa ccacaccaga caaaaagcat
961 cagaaggaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc
1021 cagcctataa agttrccaga aaaagacagc tggactgtca atgatataca gaaattagta
1081 ggaaaactaa attgggcaag tcagatttat gcagggatta aagtaaagca actgtgtaaa
1141 ctcctcaggg gagccaaagc actaacagaa gtagtagcat tgactgagga agcagaatta
1201 gaattggcag agaacaggga aattctaaaa gaccctgtgc atggggtata ttatgaccca
1261 tcaaaagact tagta
//
last modified: Tue May 31 10:56 2022