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LOCUS	    EU177894		    1275 bp    RNA     linear	VRL 30-SEP-2008
DEFINITION  HIV-1 isolate GH_017 from Ghana pol protein (pol) gene, partial cds
ACCESSION   EU177894
VERSION     EU177894.1 GI:163963669
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1275)
            Show all sequences for reference 1
  AUTHORS   Delgado,E., Ampofo,W.K., Sierra,M., Torpey,K., Perez-Alvarez,L.,
	    Bonney,E.Y., Mukadi,Y.D., Lartey,M., Nyarko,C., Amenyah,R.N.,
	    Thomson,M. and Najera,R.
  TITLE     High prevalence of unique recombinant forms of HIV-1 in Ghana:
	    molecular epidemiology from an antiretroviral resistance study.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 48(5); 599-606 (2008)
  PUBMED    18645511
REFERENCE   2 (bases 1 to 1275)
            Show all sequences for reference 2
  AUTHORS   Delgado,E., Ampofo,W., Sierra,M., Perez-Alvarez,L., Bonney,E.,
	    Thomson,M.M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-SEP-2007) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra. Majadahonda a Pozuelo Km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1275
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="GH_017"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="Ghana"
		     /note="subtype: CRF02_AG/A3; acronym: HIV-1"
     gene	     <1..>1275
		     /gene="pol"
     CDS	     <1..>1275
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABY50759.1"
		     /db_xref="GI:163963670"
		     /translation="PQITLWQRPLVTVRIEGQLIEALLDTGADDTVLEGINLPGKWKP
		     KMIGGIGGFIKVRQYDQILIEICGKEAIGTVLXGPTPVNIIGRNMLTQIGCTLNFPIS
		     PIETVPVTLKPGMDGPKVKQWPLTEEKIKALTEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPYRTKNPE
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRAHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVV
		     ALTEEAELELAENREILKDPVHGVYYDPSKDLV"
BASE COUNT	502 a	 204 c	  270 g    293 t      6 other
ORIGIN
       1 cctcaaatca ctctttggca acgaccctta gtcacagtaa gaatagaggg acagctaata 
      61 gaagccctat tagacacagg agcagatgat acagtattag aaggaataaa tttaccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatactta tagaaatttg tggaaaagag gccataggta cagtattart aggacctacg 
     241 cctgtcaaca taattggacg aaacatgttg actcagattg gttgtacttt aaattttcca 
     301 attagtccta ttgaaactgt accagtaaca ttaaagccag gaatggatgg cccaaaggtt 
     361 aaacaatggc cattgacaga agaaaaaata aaggcattaa cagaaatttg tacagagatg 
     421 gaaaaagaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagatag tactaaatgg agaaaattag tagatttcag agaactcaat 
     541 aagagractc aagacttctg ggaggtccaa ttaggaatac ctcatcccgc gggattaaar 
     601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt accyctagat 
     661 aaagacttta gaaagtatac tgcattcact atacctagtg taaataatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatatttcag 
     781 gcaagcatga caaaaatttt agagccctat agaacaaaaa atccagagat agtgatctac 
     841 caatatatgg atgatctata tgtaggatct gatttagaaa tagggcagca tagaacaaaa 
     901 atagaggagc tgagagctca tctaytgaaa tggggattaa ccacaccaga caaaaagcat 
     961 cagaaggaac ctccatttct ttggatggga tatgaactcc atcctgacaa atggacagtc 
    1021 cagcctataa agttrccaga aaaagacagc tggactgtca atgatataca gaaattagta 
    1081 ggaaaactaa attgggcaag tcagatttat gcagggatta aagtaaagca actgtgtaaa 
    1141 ctcctcaggg gagccaaagc actaacagaa gtagtagcat tgactgagga agcagaatta 
    1201 gaattggcag agaacaggga aattctaaaa gaccctgtgc atggggtata ttatgaccca 
    1261 tcaaaagact tagta
//
last modified: Tue May 31 10:56 2022


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