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LOCUS EF583713 695 bp RNA linear VRL 02-JAN-2008
DEFINITION HIV-1 isolate ABB28-96 from Cameroon envelope glycoprotein (env)
gene, partial cds
ACCESSION EF583713
VERSION EF583713.1 GI:156858039
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 695)
Show all sequences for reference 1
AUTHORS Eshleman,S.H., Hudelson,S.E., Bruce,R., Lee,T., Owens,M.R.,
Hackett,J., Swanson,P., Devare,S.G. and Marlowe,N.
TITLE Analysis of HIV Type 1 gp41 Sequences in Diverse HIV Type 1 Strains
JOURNAL AIDS Res. Hum. Retroviruses 23 (12), 1593-1598 (2007)
PUBMED 18160019
REFERENCE 2 (bases 1 to 695)
Show all sequences for reference 2
AUTHORS Eshleman,S.H., Hudleson,S.E., Bruce,R., Lee,T., Owens,M.R.,
Hackett,J. Jr.., Swanson,P., Devare,S.G. and Marlowe,N.
TITLE Direct Submission
JOURNAL Submitted (27-APR-2007) Department of Pathology, The Johns Hopkins
Medical Institutions, Ross Building 646, 720 Rutland Avenue,
Baltimore, MD 21205, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Brennan,C.A., Bodelle,P., Coffey,R., Devare,S.G., Golden,A.,
Hackett,J.J., Harris,B., Holzmayer,V., Luk,K.-C., Schochetman,G.,
Swanson,P., Yamaguchi,J., Vallari,A., Ndembi,N., Ngansop,C.,
Makamche,F., Mbanya,D., Gurtler,L.G., Zekeng,L. and Kaptue,L.
TITLE The prevalence of diverse HIV-1 strains was stable in Cameroonian
blood donors from 1996 to 2004.
JOURNAL J. Acquir. Immune Defic. Syndr.. 49(4); 432-9 (2008)
PUBMED 18931623
FEATURES Location/Qualifiers
source 1..695
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="ABB28-96"
/db_xref="taxon:11676"
/country="Cameroon"
gene <1..>695
/gene="env"
CDS <1..>695
/gene="env"
/note="gp41"
/codon_start="3"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABU96362.1"
/db_xref="GI:156858040"
/translation="WRSXLYKYKVVQIEPLGVAPTNAKRRVVQREKRAVGIGAVFLGF
LGAAGSTMGAASITLTVQARLLLSGIVQQQSNLLRAIEAQQHLLKLTVWGIKQLQARV
LALERYLRDQQLLGIWGCSGKLICTTTVPWNSSWSNKSQDEIWNNMTWMQWDXEISNY
TEIIYXLIEQSQNQQEKNEQDLLALDKWASLWNWFDITNWLWYIKIFVMIVGGLIGLR
IVFAVLNVINRVX"
BASE COUNT 229 a 108 c 177 g 172 t 9 other
ORIGIN
1 attggagaag tgamttatat aagtataagg tagtacaaat tgaaccatta ggtgtggcac
61 ccaccaatgc aaaaagaaga gtggtgcaga gagaaaaaag agcagtggga ataggagctg
121 tgttccttgg gttcttagga gcagcaggaa gcactatggg cgcggcgtca ataacgctga
181 cggtacaggc cagrctatta ttgtctggta tagtgcaaca gcagagcaat ttgctgaggg
241 ctatagaggc tcaacaacat ctgttgaaac tcacggtctg gggcattaaa cagctccagg
301 caagagtcct ggctctggaa agatacctaa gggatcaaca gctcctagga atttggggct
361 gctctggaaa actcatctgc accactactg tgccctggaa ttctagttgg agtaataart
421 ctcaggatga aatttggaac aatatgacct ggatgcaatg ggataragaa attagcaatt
481 acacagarat aatatatrrc ctaattgaac aatcgcagaa ccagcaggaa aagaatgaac
541 aagacttatt rgcattggac aagtgggcaa gtctgtggaa ttggtttgac ataacaaact
601 ggctatggta tataaaaata tttgtaatga tagtaggagg tttgataggt ttaagaatag
661 tttttgctgt gcttaatgta ataaatagag ttags
//
last modified: Tue May 31 10:56 2022