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LOCUS	    EF472786		     867 bp    DNA     linear	VRL 08-JUL-2007
DEFINITION  HIV-1 clone 65B from USA integrase (pol) gene, partial cds
ACCESSION   EF472786
VERSION     EF472786.1 GI:150382474
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Natural polymorphism of the HIV-1 integrase gene and mutations
	    associated with integrase inhibitor resistance.
  JOURNAL   Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
  PUBMED    17668566
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2007) Infectious Diseases, Yale University School
	    of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolation_source="post-AZT integrase inhibitor-naive
		     patient"
		     /db_xref="taxon:11676"
		     /clone="65B"
		     /country="USA"
     gene	     <1..867
		     /gene="pol"
     CDS	     <1..867
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ABR68208.1"
		     /db_xref="GI:150382475"
		     /translation="FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
		     LKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVSSGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
		     GDDCVASRXDED"
BASE COUNT	334 a	 127 c	  214 g    191 t      1 other
ORIGIN
       1 tttttagatg gaatagataa ggcccaagac gaacatgaga aatatcacag taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct gtggtagcaa aagaaatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagctata catgggcaag tagactgtag tccaggaata 
     181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtatcc 
     241 agtggatata tagaagcaga agttattcca gcagagacag ggcaggaaac agcatacttt 
     301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagta ctactgttaa ggccgcctgt tggtgggcgg ggatcaagca ggaatttggc 
     421 attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa 
     481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta 
     541 ttcatccaca attttaaaag aaaagggggg attggagggt acagtgcagg ggaaagaata 
     601 gtagatataa tagcatcaga catacaaact aaagaattac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag 
     721 cttctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacnggatga ggattag
//
last modified: Tue May 31 10:56 2022


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