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LOCUS EF472786 867 bp DNA linear VRL 08-JUL-2007
DEFINITION HIV-1 clone 65B from USA integrase (pol) gene, partial cds
ACCESSION EF472786
VERSION EF472786.1 GI:150382474
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Natural polymorphism of the HIV-1 integrase gene and mutations
associated with integrase inhibitor resistance.
JOURNAL Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
PUBMED 17668566
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2007) Infectious Diseases, Yale University School
of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolation_source="post-AZT integrase inhibitor-naive
patient"
/db_xref="taxon:11676"
/clone="65B"
/country="USA"
gene <1..867
/gene="pol"
CDS <1..867
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ABR68208.1"
/db_xref="GI:150382475"
/translation="FLDGIDKAQDEHEKYHSNWRAMASDFNLPPVVAKEIVASCDKCQ
LKGEAIHGQVDCSPGIWQLDCTHLEGKVILVAVHVSSGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKAKIIRDYGKQMA
GDDCVASRXDED"
BASE COUNT 334 a 127 c 214 g 191 t 1 other
ORIGIN
1 tttttagatg gaatagataa ggcccaagac gaacatgaga aatatcacag taattggaga
61 gcaatggcta gtgattttaa cctgccacct gtggtagcaa aagaaatagt agccagctgt
121 gataaatgtc agctaaaagg agaagctata catgggcaag tagactgtag tccaggaata
181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtatcc
241 agtggatata tagaagcaga agttattcca gcagagacag ggcaggaaac agcatacttt
301 atcttaaaat tagcaggaag atggccagta aaaacaatac atacagacaa tggcagcaat
361 ttcaccagta ctactgttaa ggccgcctgt tggtgggcgg ggatcaagca ggaatttggc
421 attccctaca atccccaaag tcaaggagta gtagaatcta tgaataaaga attaaagaaa
481 attataggac aggtaagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta
541 ttcatccaca attttaaaag aaaagggggg attggagggt acagtgcagg ggaaagaata
601 gtagatataa tagcatcaga catacaaact aaagaattac aaaaacaaat tacaaaaatt
661 caaaattttc gggtttatta cagggacagc agagatccac tttggaaagg accagcaaag
721 cttctctgga aaggtgaagg ggcagtagta atacaggata atagtgacat aaaagtagtg
781 ccaagaagaa aagcaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacnggatga ggattag
//
last modified: Tue May 31 10:56 2022