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LOCUS	    EF472746		     867 bp    DNA     linear	VRL 08-JUL-2007
DEFINITION  HIV-1 clone 25B from USA integrase (pol) gene, partial cds
ACCESSION   EF472746
VERSION     EF472746.1 GI:150380750
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 867)
            Show all sequences for reference 1
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Natural polymorphism of the HIV-1 integrase gene and mutations
	    associated with integrase inhibitor resistance.
  JOURNAL   Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
  PUBMED    17668566
REFERENCE   2 (bases 1 to 867)
            Show all sequences for reference 2
  AUTHORS   Lataillade,M., Chiarella,J. and Kozal,M.J.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-MAR-2007) Infectious Diseases, Yale University School
	    of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES             Location/Qualifiers
     source	     1..867
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="48-1275"
		     /isolation_source="integrase inhibitor-naive patient"
		     /db_xref="taxon:11676"
		     /clone="25B"
		     /country="USA"
		     /collection_date="2001"
     gene	     <1..867
		     /gene="pol"
     CDS	     <1..867
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="integrase"
		     /protein_id="ABR68168.1"
		     /db_xref="GI:150380751"
		     /translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQ
		     LKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFIL
		     KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
		     IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
		     KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMA
		     GDDCVASRQDED"
BASE COUNT	334 a	 127 c	  219 g    185 t      2 other
ORIGIN
       1 tttttagatg gaatagataa ggcccaagaa gaacatgaga aatatcacag taattggaga 
      61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa gagagatagt agccagctgt 
     121 gataaatgtc agctaaaagg agaagctatg catggacaag tagactgtag tccaggaata 
     181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtagcc 
     241 agtggatata tagaagcaga agttattcca gcagagacag ggcaggaaac agcatacttt 
     301 atcttaaaat tagcaggaag atggccagtg aaaacaatac atacagacaa tggcagcaat 
     361 ttcaccagta ctacggtgaa ggccgcctgt tggtgggcag ggatcaagca ggaatttggt 
     421 attccctaca atccccaaag tcaaggagta gtagaatcya tgaataaaga attaaagaaa 
     481 attataggac aggtgagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta 
     541 ttcatccaya attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata 
     601 gtagacataa tagcatcaga catacaaact aaagaattac aaaaacaaat tacaaaaatt 
     661 caaaattttc gggtctatta cagggacagc agagacccac tttggaaagg accagcaaag 
     721 ctcctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg 
     781 ccaagaagaa aagtaaagat cattagggat tatggaaaac agatggcagg tgatgattgt 
     841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022


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