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LOCUS EF472746 867 bp DNA linear VRL 08-JUL-2007
DEFINITION HIV-1 clone 25B from USA integrase (pol) gene, partial cds
ACCESSION EF472746
VERSION EF472746.1 GI:150380750
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 867)
Show all sequences for reference 1
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Natural polymorphism of the HIV-1 integrase gene and mutations
associated with integrase inhibitor resistance.
JOURNAL Antivir. Ther. (Lond.) 12 (4), 563-70 (2007)
PUBMED 17668566
REFERENCE 2 (bases 1 to 867)
Show all sequences for reference 2
AUTHORS Lataillade,M., Chiarella,J. and Kozal,M.J.
TITLE Direct Submission
JOURNAL Submitted (06-MAR-2007) Infectious Diseases, Yale University School
of Medicine, 300 Cedar Street Suite 169, New Haven, CT 06520, USA
FEATURES Location/Qualifiers
source 1..867
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="48-1275"
/isolation_source="integrase inhibitor-naive patient"
/db_xref="taxon:11676"
/clone="25B"
/country="USA"
/collection_date="2001"
gene <1..867
/gene="pol"
CDS <1..867
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="integrase"
/protein_id="ABR68168.1"
/db_xref="GI:150380751"
/translation="FLDGIDKAQEEHEKYHSNWRAMASDFNLPPVVAREIVASCDKCQ
LKGEAMHGQVDCSPGIWQLDCTHLEGKVILVAVHVASGYIEAEVIPAETGQETAYFIL
KLAGRWPVKTIHTDNGSNFTSTTVKAACWWAGIKQEFGIPYNPQSQGVVESMNKELKK
IIGQVRDQAEHLKTAVQMAVFIHNFKRKGGIGGYSAGERIVDIIASDIQTKELQKQIT
KIQNFRVYYRDSRDPLWKGPAKLLWKGEGAVVIQDNSDIKVVPRRKVKIIRDYGKQMA
GDDCVASRQDED"
BASE COUNT 334 a 127 c 219 g 185 t 2 other
ORIGIN
1 tttttagatg gaatagataa ggcccaagaa gaacatgaga aatatcacag taattggaga
61 gcaatggcta gtgattttaa cctgccacct gtagtagcaa gagagatagt agccagctgt
121 gataaatgtc agctaaaagg agaagctatg catggacaag tagactgtag tccaggaata
181 tggcaactag attgtacaca tttagaagga aaagttatcc tggtagcagt tcatgtagcc
241 agtggatata tagaagcaga agttattcca gcagagacag ggcaggaaac agcatacttt
301 atcttaaaat tagcaggaag atggccagtg aaaacaatac atacagacaa tggcagcaat
361 ttcaccagta ctacggtgaa ggccgcctgt tggtgggcag ggatcaagca ggaatttggt
421 attccctaca atccccaaag tcaaggagta gtagaatcya tgaataaaga attaaagaaa
481 attataggac aggtgagaga tcaggctgaa catcttaaga cagcagtaca aatggcagta
541 ttcatccaya attttaaaag aaaagggggg attggggggt acagtgcagg ggaaagaata
601 gtagacataa tagcatcaga catacaaact aaagaattac aaaaacaaat tacaaaaatt
661 caaaattttc gggtctatta cagggacagc agagacccac tttggaaagg accagcaaag
721 ctcctctgga aaggtgaagg ggcagtagta atacaagata atagtgacat aaaagtagtg
781 ccaagaagaa aagtaaagat cattagggat tatggaaaac agatggcagg tgatgattgt
841 gtggcaagta gacaggatga ggattag
//
last modified: Tue May 31 10:56 2022