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LOCUS	    EF449952		     971 bp    RNA     linear	VRL 13-AUG-2008
DEFINITION  HIV-1 isolate 1845456 from Switzerland pol protein (pol) gene,
	    partial cds
ACCESSION   EF449952
VERSION     EF449952.1 GI:134023505
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 971)
            Show all sequences for reference 1
  AUTHORS   von Wyl,V., Yerly,S., Boni,J., Burgisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Gunthard,H.F.
  CONSRTM   for the Swiss HIV Cohort Study
  TITLE     Emergence of HIV-1 drug resistance in previously untreated patients
	    initiating combination antiretroviral treatment: a comparison of
	    different regimen types
  JOURNAL   Arch. Intern. Med. 167 (16), 1782-1790 (2007)
  PUBMED    17846398
REFERENCE   2 (bases 1 to 971)
            Show all sequences for reference 2
  AUTHORS   von Wyl,V., Yerly,S., Boeni,J., Buergisser,P., Klimkait,T.,
	    Battegay,M., Furrer,H., Telenti,A., Hirschel,B., Vernazza,P.L.,
	    Bernasconi,E., Rickenbach,M., Perrin,L., Ledergerber,B. and
	    Guenthard,H.F.
  CONSRTM   Swiss HIV Cohort Study
  TITLE     Direct Submission
  JOURNAL   Submitted (22-FEB-2007) Division of Infectious Diseases and
	    Hospital Epidemiology, University Hospital Zurich, Raemistrasse
	    100, Zurich CH-8091, Switzerland
FEATURES             Location/Qualifiers
     source	     1..971
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="1845456"
		     /db_xref="taxon:11676"
		     /country="Switzerland"
		     /collection_date="2004"
     gene	     <1..>971
		     /gene="pol"
     CDS	     <1..>971
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABO45610.1"
		     /db_xref="GI:134023506"
		     /translation="PQITLWQRPLVTIRVAGQLKEALLDTGADDTVLEEINLPGNWKP
		     KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPRIKQWPLTEEKIKALTAICEEMEKEGKISKVGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKXTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKSFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRAKNPE
		     IVIYQYMDDLYVGSDLEIGQHRAKIEELREHLLRWGFTTPDKKHQKEP"
BASE COUNT	382 a	 160 c	  205 g    223 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctt gtcacaataa gagtagctgg acagctaaag 
      61 gaggctctct tagacacagg ggcagatgat acagtattag aagaaataaa tttgccagga 
     121 aattggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 caaatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggtag aaatctgttg actcagcttg gatgtacact aaattttcca 
     301 attagtccca tagaaactgt accagtaaaa ttgaagccag gaatggatgg cccaaggatt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattaa cagcaatttg tgaagagatg 
     421 gagaaggaag gaaaaatttc aaaagtaggg cccgaaaatc catataacac tccagtattt 
     481 gccataaaaa agaaggacag taccaagtgg agaaaattag tagatttcag ggaactcaat 
     541 aaargaactc aagacttttg ggaagttcaa ttagggatac cacacccagc agggttaaaa 
     601 aagaaaaaat cagtgacagt actagatgtg ggggatgcat atttctcagt tcctttagat 
     661 aaaagcttca ggaaatatac tgcattcacc atacctagtg taaacaatga aacaccaggg 
     721 attagatatc aatataatgt gcttccacag ggatggaaag gatcaccagc aatcttccag 
     781 tgtagcatga caaaaatctt agagcccttt agagcgaaaa acccagaaat agttatctat 
     841 caatatatgg atgacttata tgtaggctct gatttagaaa taggacaaca tagagcaaaa 
     901 atagaggagt taagagaaca cctattgaga tggggattta ccacaccaga caagaaacat 
     961 cagaaggaac c
//
last modified: Tue May 31 10:56 2022


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