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LOCUS EF440778 2592 bp DNA linear VRL 16-MAY-2008
DEFINITION HIV-1 clone JHU559_FDC_ccG2S from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION EF440778
VERSION EF440778.1 GI:155206550
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2592)
Show all sequences for reference 1
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Characterization of the follicular dendritic cell reservoir of
human immunodeficiency virus type 1
JOURNAL J. Virol. 82 (11), 5548-5561 (2008)
PUBMED 18385252
REFERENCE 2 (bases 1 to 2592)
Show all sequences for reference 2
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
University, C211A BNSN, Provo, UT 84602, USA
FEATURES Location/Qualifiers
source 1..2592
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="JHU559"
/isolation_source="cocultured follicular dendritic cells
from axillary lymph node"
/db_xref="taxon:11676"
/clone="JHU559_FDC_ccG2S"
/country="USA: MD"
gene 1..2592
/gene="env"
CDS 1..2592
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABT17557.1"
/db_xref="GI:155206551"
/translation="MKVKETRKNYQHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
PVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVTNANNSKTNISRIEEKGEIKNC
SFNITTSRRDKKRKESALFYKLDVVPITDDNKNTNITSYRLIHCNTSTITQACPKVTF
EPIPIHYCAPAGFALLKCNNKTFSGSGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
DVVIRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKDIPLAGPGRFWTTGKIIGDIR
QAHCNLSKADWNQTLKQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCN
STKLFNSTWNSDGTRNSSETSSETVITLPCRIKQIVNMWQEVGKAMYAPPISGQIRCS
SNITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKA
KRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAQARQLLSGIVQQQNNLLRAI
EAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNR
SLEQIWNNMTWMEWEREIDNYTSLIYTLIEESQNQQEKNEQELLALDKWASLWNWFDI
TNWLWYIKLFIMIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTHLPTPRGPDRPEET
EGEGGERDRDRSTRLVSGFFPLIWDDLRSLCLFSYHRLRDLLLIVARIVEILGHRGWE
ILKYWGNLLQYWSQEIKKNAISLLNATAIAVGEGTDRIIEVVQRIFRAFLHIPRRIRQ
GLERALL"
BASE COUNT 919 a 444 c 595 g 634 t
ORIGIN
1 atgaaagtga aggagaccag gaagaattat cagcacttgt ggacatgggg caccatgctc
61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc
121 tattatgggg tacctgtgtg gaaagaagcg actaccactc tattttgtgc atcagatgct
181 aaagcatacg atccagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac
301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca
361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttactaat
421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt
481 tctttcaata ttaccacaag cagaagagat aaaaagagga aagaatctgc acttttttat
541 aaacttgatg tagtaccaat aacagatgat aataaaaata ctaatattac tagctatagg
601 ttgatacatt gtaacacctc aaccattaca caggcctgtc caaaggtaac ctttgaacca
661 attcccatac attattgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca
721 ttcagtggat caggaccatg tacaaatgtc agcacagtac aatgtacaca tggaattaag
781 ccagtagtgt caactcaatt gttactaaat ggcagtctag cagaagaaga tgtagtaatt
841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta
901 gaaattaatt gtacaagacc caacaacaat acaagaaaag atatacctct agcaggacca
961 gggagatttt ggacaacagg aaaaataata ggagatataa gacaagcaca ttgtaacctt
1021 agtaaagcag actggaatca aactttaaaa caggtagtta aaaaattagg ggaacaattt
1081 aggaataaaa caatagtctt taagccatcc tcaggaggag acctagaagt tgtaatgcac
1141 atttttaatt gtagaggaga atttttctac tgtaattcaa caaaactgtt taatagtact
1201 tggaatagtg atggtactag aaatagtagt gaaacgtcat ctgaaacagt tatcacactc
1261 ccatgtagaa taaaacaaat tgtaaacatg tggcaggaag taggaaaagc aatgtatgcc
1321 cctcccatca gtggacagat taggtgctca tcaaatatta cagggctaat attaacaaga
1381 gatggtggca aaggtgacaa catcaccaac aacaccgaga ttttcagacc tggaggagga
1441 aatatgcagg acaattggag aagtgaatta tataaatata aggtagtaca aattgaacca
1501 ttaggaatag cacccaccaa ggcaaagaga agagtggtgc aaagagaaaa aagagcagtg
1561 gggataggag ctgtgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcg
1621 tcaatagcgc tgacggcaca ggccagacaa ttgttgtctg gtatagtgca acagcagaac
1681 aatctgctga gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc
1741 aagcagctcc aggcaagagt cctggctgtg gaaagatacc taaaggatca acagctccta
1801 gggatatggg gttgctctgg aaaactcatt tgcaccacta ctgtgccttg gaatagtagt
1861 tggagtaaca gatctttgga acagatttgg aataacatga cctggatgga gtgggaaaga
1921 gaaattgaca attacacaag cttaatatac accttaattg aagaatcgca aaaccagcaa
1981 gaaaagaatg aacaagaatt attggcatta gataagtggg caagtttgtg gaattggttt
2041 gacataacaa actggctgtg gtatataaaa ttattcataa tgatagtagg aggcttaata
2101 ggtttaagaa taatttttgc tgtactttct gtagtgaata gagttaggca gggatactca
2161 ccattgtcat ttcagaccca cctcccaacc ccgaggggac ccgacaggcc agaagaaaca
2221 gaaggagaag gtggagagag agacagagac agatccactc gattagtcag cggattcttt
2281 ccacttatct gggacgatct acggagcctg tgcctcttca gctaccaccg cttgagagac
2341 ttactcttga ttgtagcgag gattgtggaa attctgggac acagggggtg ggaaatcctc
2401 aagtactggg ggaatctcct gcagtattgg agtcaggaga taaagaagaa tgccattagc
2461 ttgctcaacg ccacagccat agcagtaggt gagggaacag ataggattat agaagtagta
2521 caaagaattt ttagagcttt tctccatata cctagaagaa taagacaggg cttagaaaga
2581 gctttgctat aa
//
last modified: Tue May 31 10:56 2022