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LOCUS	    EF440778		    2592 bp    DNA     linear	VRL 16-MAY-2008
DEFINITION  HIV-1 clone JHU559_FDC_ccG2S from USA envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   EF440778
VERSION     EF440778.1 GI:155206550
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2592)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Characterization of the follicular dendritic cell reservoir of
	    human immunodeficiency virus type 1
  JOURNAL   J. Virol. 82 (11), 5548-5561 (2008)
  PUBMED    18385252
REFERENCE   2 (bases 1 to 2592)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
	    University, C211A BNSN, Provo, UT 84602, USA
FEATURES             Location/Qualifiers
     source	     1..2592
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="JHU559"
		     /isolation_source="cocultured follicular dendritic cells
		     from axillary lymph node"
		     /db_xref="taxon:11676"
		     /clone="JHU559_FDC_ccG2S"
		     /country="USA: MD"
     gene	     1..2592
		     /gene="env"
     CDS	     1..2592
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABT17557.1"
		     /db_xref="GI:155206551"
		     /translation="MKVKETRKNYQHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
		     PVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVTNANNSKTNISRIEEKGEIKNC
		     SFNITTSRRDKKRKESALFYKLDVVPITDDNKNTNITSYRLIHCNTSTITQACPKVTF
		     EPIPIHYCAPAGFALLKCNNKTFSGSGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
		     DVVIRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKDIPLAGPGRFWTTGKIIGDIR
		     QAHCNLSKADWNQTLKQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCN
		     STKLFNSTWNSDGTRNSSETSSETVITLPCRIKQIVNMWQEVGKAMYAPPISGQIRCS
		     SNITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKA
		     KRRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAQARQLLSGIVQQQNNLLRAI
		     EAQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNR
		     SLEQIWNNMTWMEWEREIDNYTSLIYTLIEESQNQQEKNEQELLALDKWASLWNWFDI
		     TNWLWYIKLFIMIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTHLPTPRGPDRPEET
		     EGEGGERDRDRSTRLVSGFFPLIWDDLRSLCLFSYHRLRDLLLIVARIVEILGHRGWE
		     ILKYWGNLLQYWSQEIKKNAISLLNATAIAVGEGTDRIIEVVQRIFRAFLHIPRRIRQ
		     GLERALL"
BASE COUNT	919 a	 444 c	  595 g    634 t
ORIGIN
       1 atgaaagtga aggagaccag gaagaattat cagcacttgt ggacatgggg caccatgctc 
      61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc 
     121 tattatgggg tacctgtgtg gaaagaagcg actaccactc tattttgtgc atcagatgct 
     181 aaagcatacg atccagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac 
     301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca 
     361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttactaat 
     421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt 
     481 tctttcaata ttaccacaag cagaagagat aaaaagagga aagaatctgc acttttttat 
     541 aaacttgatg tagtaccaat aacagatgat aataaaaata ctaatattac tagctatagg 
     601 ttgatacatt gtaacacctc aaccattaca caggcctgtc caaaggtaac ctttgaacca 
     661 attcccatac attattgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca 
     721 ttcagtggat caggaccatg tacaaatgtc agcacagtac aatgtacaca tggaattaag 
     781 ccagtagtgt caactcaatt gttactaaat ggcagtctag cagaagaaga tgtagtaatt 
     841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta 
     901 gaaattaatt gtacaagacc caacaacaat acaagaaaag atatacctct agcaggacca 
     961 gggagatttt ggacaacagg aaaaataata ggagatataa gacaagcaca ttgtaacctt 
    1021 agtaaagcag actggaatca aactttaaaa caggtagtta aaaaattagg ggaacaattt 
    1081 aggaataaaa caatagtctt taagccatcc tcaggaggag acctagaagt tgtaatgcac 
    1141 atttttaatt gtagaggaga atttttctac tgtaattcaa caaaactgtt taatagtact 
    1201 tggaatagtg atggtactag aaatagtagt gaaacgtcat ctgaaacagt tatcacactc 
    1261 ccatgtagaa taaaacaaat tgtaaacatg tggcaggaag taggaaaagc aatgtatgcc 
    1321 cctcccatca gtggacagat taggtgctca tcaaatatta cagggctaat attaacaaga 
    1381 gatggtggca aaggtgacaa catcaccaac aacaccgaga ttttcagacc tggaggagga 
    1441 aatatgcagg acaattggag aagtgaatta tataaatata aggtagtaca aattgaacca 
    1501 ttaggaatag cacccaccaa ggcaaagaga agagtggtgc aaagagaaaa aagagcagtg 
    1561 gggataggag ctgtgttcct tgggttcttg ggagcagcag gaagcactat gggcgcagcg 
    1621 tcaatagcgc tgacggcaca ggccagacaa ttgttgtctg gtatagtgca acagcagaac 
    1681 aatctgctga gggctattga ggcgcaacag catctgttgc aactcacagt ctggggcatc 
    1741 aagcagctcc aggcaagagt cctggctgtg gaaagatacc taaaggatca acagctccta 
    1801 gggatatggg gttgctctgg aaaactcatt tgcaccacta ctgtgccttg gaatagtagt 
    1861 tggagtaaca gatctttgga acagatttgg aataacatga cctggatgga gtgggaaaga 
    1921 gaaattgaca attacacaag cttaatatac accttaattg aagaatcgca aaaccagcaa 
    1981 gaaaagaatg aacaagaatt attggcatta gataagtggg caagtttgtg gaattggttt 
    2041 gacataacaa actggctgtg gtatataaaa ttattcataa tgatagtagg aggcttaata 
    2101 ggtttaagaa taatttttgc tgtactttct gtagtgaata gagttaggca gggatactca 
    2161 ccattgtcat ttcagaccca cctcccaacc ccgaggggac ccgacaggcc agaagaaaca 
    2221 gaaggagaag gtggagagag agacagagac agatccactc gattagtcag cggattcttt 
    2281 ccacttatct gggacgatct acggagcctg tgcctcttca gctaccaccg cttgagagac 
    2341 ttactcttga ttgtagcgag gattgtggaa attctgggac acagggggtg ggaaatcctc 
    2401 aagtactggg ggaatctcct gcagtattgg agtcaggaga taaagaagaa tgccattagc 
    2461 ttgctcaacg ccacagccat agcagtaggt gagggaacag ataggattat agaagtagta 
    2521 caaagaattt ttagagcttt tctccatata cctagaagaa taagacaggg cttagaaaga 
    2581 gctttgctat aa
//
last modified: Tue May 31 10:56 2022


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