View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EF440765 2589 bp DNA linear VRL 16-MAY-2008
DEFINITION HIV-1 clone JHU559_MFG_E12 from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION EF440765
VERSION EF440765.1 GI:155206524
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2589)
Show all sequences for reference 1
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Characterization of the follicular dendritic cell reservoir of
human immunodeficiency virus type 1
JOURNAL J. Virol. 82 (11), 5548-5561 (2008)
PUBMED 18385252
REFERENCE 2 (bases 1 to 2589)
Show all sequences for reference 2
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
University, C211A BNSN, Provo, UT 84602, USA
FEATURES Location/Qualifiers
source 1..2589
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="JHU559"
/isolation_source="uncultured brain tissue from mid
frontal gyrus"
/db_xref="taxon:11676"
/clone="JHU559_MFG_E12"
/country="USA: MD"
gene 1..2589
/gene="env"
CDS 1..2589
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABT17544.1"
/db_xref="GI:155206525"
/translation="MKVKETRKNYQHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
PVWKEATTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVTNANNSKTNISRIEEKGEIKNC
SFNITTRIRDKKRKESALFYKLDVVPITNDNNNTNNTSYRMIHCNTSTITQACPKVTF
EPIPIHYCAPAGFALLKCNNKTFSGPGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
DVVIRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKGIHIGPGSFWTTGEIIGDIRQ
AHCNLSRADWNQTLKQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCNS
TKLFNSTWHSDGTRNGSEKPPETIITLPCRIKQIVNMWQEVGRAMYAPPISGQIRCSS
NITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKAK
RRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAQARQLLSGIVQQQNNLLRAIE
AQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRS
LEQIWNNMTWMEWEREIDNYTSLIYTLIEESQNRQEKNEQELLALDKWASLWNWFDIT
NWLWYIKLFIMIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTHLPTPRGPDRPEETE
GEGGERDRDRSTRLVSGFLPLIWDDLRSLCLFSYHRLRDLLLIVARIVEILGHRGWEI
LKYWGNLLQYWSQEIKKNAISLLNATAIAVGEGTDRIIEVAQRIFRAFLHIPRRIRQG
LERALL"
BASE COUNT 913 a 443 c 604 g 629 t
ORIGIN
1 atgaaagtga aggagaccag gaagaattat cagcacttgt ggacatgggg caccatgctc
61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc
121 tattatgggg tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaagcatatg atacagaggt acataatgtt tgggccacac atgcctgtgt acccacagat
241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac
301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca
361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttactaat
421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt
481 tctttcaata ttaccacaag aataagagat aaaaagagga aagaatctgc acttttttat
541 aaacttgatg tagtaccaat aacaaatgat aataataata ctaataatac tagctatagg
601 atgatacatt gtaacacctc aacaattaca caggcctgtc caaaggtaac ctttgaacca
661 attcccatac attactgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca
721 ttcagtggac caggaccatg tacaaatgtc agcacagtac aatgtacaca tggaattaag
781 ccagtagtgt caactcaact gttactaaat ggcagtctag cagaagaaga tgtagtaatt
841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta
901 gaaattaatt gtacaagacc caacaacaat acaagaaaag gtatacatat aggaccaggg
961 agcttttgga caacaggaga aataatagga gatataagac aagcacattg taaccttagt
1021 agagcagact ggaatcaaac tttaaaacag gtagttaaga aattagggga acaatttagg
1081 aataaaacaa tagtctttaa gccatcctca ggaggggacc tagaagttgt aatgcacatt
1141 tttaattgta gaggagaatt tttctactgt aattcaacaa aactgtttaa tagtacttgg
1201 catagtgatg gtactagaaa tggtagtgaa aagccacctg aaacaattat cacactccca
1261 tgtagaataa aacaaattgt aaacatgtgg caggaagtag gaagagcaat gtatgcccct
1321 cccatcagtg gacagattag gtgctcatcg aatattacgg ggctgatatt aacaagagat
1381 ggtggcaaag gtgacaacat caccaacaac accgagatct tcagacctgg aggaggaaat
1441 atgcaggaca attggagaag tgaattatat aaatataagg tagtacaaat tgaaccatta
1501 ggaatagcac ccaccaaggc aaagagaaga gtggtgcaga gagaaaaaag agcagtgggg
1561 ataggagctg tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca
1621 atagcgctga cggcacaggc cagacaattg ttgtctggta tagtgcaaca gcagaacaat
1681 ctgctgagag ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag
1741 cagctccagg caagagtcct ggctgtggaa agatacctaa aggatcaaca gctcctaggg
1801 atatggggtt gctctggaaa actcatttgc accactactg tgccttggaa tagtagttgg
1861 agtaacagat ctttggaaca gatttggaat aacatgacct ggatggagtg ggaaagagaa
1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcaaaa ccggcaagaa
1981 aagaatgaac aagaattatt ggcattggat aagtgggcaa gtttgtggaa ttggtttgac
2041 ataacaaact ggctgtggta tataaaatta ttcataatga tagtaggagg cttaataggt
2101 ttaagaataa tttttgctgt actttctgta gtgaatagag ttaggcaggg atactcacca
2161 ttgtcatttc agacccacct cccaaccccg aggggacccg acaggccaga agaaacagaa
2221 ggagaaggtg gagagagaga cagagacaga tccactcgat tagtcagcgg attcttgcca
2281 cttatctggg acgatctacg gagcctgtgc ctcttcagct accaccgctt gagagactta
2341 ctcttgattg tagcgaggat tgtggaaatt ctgggacaca gggggtggga aatcctcaag
2401 tactggggga atctcctgca gtattggagt caggagataa agaagaatgc cattagcttg
2461 ctcaacgcca cagccatagc agtaggtgag ggaacagata ggattataga agtagcacaa
2521 agaattttta gagcttttct tcatatacct agaagaataa gacagggctt agaaagggct
2581 ttgctataa
//
last modified: Tue May 31 10:56 2022