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LOCUS EF440729 2589 bp DNA linear VRL 16-MAY-2008
DEFINITION HIV-1 clone JHU559_T_ccA4 from USA envelope glycoprotein (env)
gene, complete cds
ACCESSION EF440729
VERSION EF440729.1 GI:155206452
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2589)
Show all sequences for reference 1
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Characterization of the follicular dendritic cell reservoir of
human immunodeficiency virus type 1
JOURNAL J. Virol. 82 (11), 5548-5561 (2008)
PUBMED 18385252
REFERENCE 2 (bases 1 to 2589)
Show all sequences for reference 2
AUTHORS Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
TITLE Direct Submission
JOURNAL Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
University, C211A BNSN, Provo, UT 84602, USA
FEATURES Location/Qualifiers
source 1..2589
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="JHU559"
/isolation_source="cocultured T cells from axillary lymph
node"
/db_xref="taxon:11676"
/clone="JHU559_T_ccA4"
/country="USA: MD"
gene 1..2589
/gene="env"
CDS 1..2589
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABT17508.1"
/db_xref="GI:155206453"
/translation="MKVKETRKNYQHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
PVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVTNANNSKTNISRIEEKGEIKNC
SFNITTRIRDKKRKESALFYKLDVVPITNDNNNTNNTSYRMIHCNTSTITQACPKVTF
EPIPIHYCAPAGFALLKCNNKTFSGSGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
DVVVRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKGIHLGPGKFWTTGEIIGDIRQ
AHCNLSRADWNQTLEQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCNS
TKLFNSTWNSDGTRNGSDKPPETIITLPCRIKQIVNMWQEVGRAMYAPPISGQIRCSS
NITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKAK
RRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAHARQLLSGIVQQQNNLLRAIE
AQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRS
LDQIWNNMTWMEWEREIDNYTSLIYTLIEESQNQQEKNEQELLALDKWASLWNWFDIT
NWLWYIKLFIMIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTHLPTPRGPDRPEETE
GEGGERDRDRSTRLVSGFFPLIWDDLRSLCLFSYHRLRDLLLIVVRIVEILGHRGWEI
LKYWGNLLQYWSQEIKKSAVSLLNATAIAVGEGTDRIIELVQRIFRAFLHIPRRIRQG
LERALL"
BASE COUNT 913 a 440 c 599 g 637 t
ORIGIN
1 atgaaagtga aggagaccag gaagaattat cagcacttgt ggacatgggg caccatgctc
61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc
121 tattatgggg tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct
181 aaagcatatg atccagaggt acataatgtt tgggccacac atgcctgtgt acccacagac
241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac
301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca
361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttactaat
421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt
481 tctttcaata ttaccacaag aataagagat aaaaagagga aagaatctgc acttttttat
541 aaacttgatg tagtaccaat aacaaatgat aataataata ctaataatac tagctatagg
601 atgatacatt gtaacacctc aacaattaca caggcctgtc caaaggtaac ctttgaacca
661 attcccatac attactgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca
721 ttcagtggat caggaccatg tacaaatgtc agcacagtac aatgtacaca tggaattaag
781 ccagtagtgt caacccaact gttactaaat ggcagtctag cagaagaaga tgtagtagtt
841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta
901 gaaattaatt gtacaagacc caacaacaat acaagaaaag gtatacatct aggaccaggg
961 aaattttgga caacaggaga aataatagga gatataagac aagcacattg taaccttagt
1021 agagcagact ggaatcaaac tttagaacag gtagttaaaa aattagggga acaatttagg
1081 aataaaacaa tagtctttaa gccatcctca ggaggggacc tagaagttgt aatgcacatt
1141 tttaattgta gaggagaatt tttctactgt aattcaacaa aactgtttaa tagtacttgg
1201 aatagtgatg gtactagaaa tggtagtgat aagccacctg aaacaattat cacactccca
1261 tgtagaataa aacaaattgt aaacatgtgg caggaagtag gaagagcaat gtatgcccct
1321 cccatcagtg gacagattag gtgctcatca aatattacag ggctgatatt aacaagagat
1381 ggtggcaaag gtgataacat cactaacaac accgagatct tcagacctgg aggaggaaat
1441 atgcaggaca attggagaag tgaattatat aaatataagg tagtacaaat tgaaccatta
1501 ggaatagcac ccaccaaggc aaagagaaga gtggtgcaaa gagaaaaaag agcagtgggg
1561 ataggagctg tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca
1621 atagcgctga cggcacatgc cagacaattg ttgtctggta tagtgcaaca gcagaacaat
1681 ctgctgagag ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag
1741 cagctccagg caagagtcct ggctgtggaa agatacctaa aggatcaaca gctcctaggg
1801 atatggggtt gctctggaaa actcatttgc accactactg tgccttggaa tagtagttgg
1861 agtaacagat ctttggacca gatttggaat aacatgacct ggatggagtg ggaaagagaa
1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcaaaa ccagcaagaa
1981 aagaatgaac aagaattatt ggcattggat aagtgggcaa gtttgtggaa ttggtttgac
2041 ataacaaact ggttgtggta tataaaatta ttcataatga tagtaggagg cttaataggt
2101 ttaagaataa tttttgctgt actttctgta gtgaatagag ttaggcaggg atactcacca
2161 ttgtcatttc agacccacct cccaaccccg aggggacccg acaggccaga agaaacagaa
2221 ggagaaggtg gagagagaga cagagacaga tccactcgat tagtcagcgg attctttcca
2281 cttatctggg acgatctacg gagcctgtgc ctcttcagct accaccgctt gagagactta
2341 ctcttgattg tagtgaggat tgtggaaatt ctgggacaca gggggtggga aatcctcaag
2401 tactggggga atctcctgca gtattggagt caggagataa agaagagtgc tgttagcttg
2461 ctcaacgcca cagccatagc agtaggtgag ggaacagata ggattataga attagtacaa
2521 agaattttta gagcttttct ccatatacct agaagaataa gacagggctt agaaagggct
2581 ttgctataa
//
last modified: Tue May 31 10:56 2022