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LOCUS	    EF440717		    2589 bp    DNA     linear	VRL 16-MAY-2008
DEFINITION  HIV-1 clone JHU559_T_ccD8 from USA envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   EF440717
VERSION     EF440717.1 GI:155206428
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2589)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Characterization of the follicular dendritic cell reservoir of
	    human immunodeficiency virus type 1
  JOURNAL   J. Virol. 82 (11), 5548-5561 (2008)
  PUBMED    18385252
REFERENCE   2 (bases 1 to 2589)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
	    University, C211A BNSN, Provo, UT 84602, USA
FEATURES             Location/Qualifiers
     source	     1..2589
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="JHU559"
		     /isolation_source="cocultured T cells from axillary lymph
		     node"
		     /db_xref="taxon:11676"
		     /clone="JHU559_T_ccD8"
		     /country="USA: MD"
     gene	     1..2589
		     /gene="env"
     CDS	     1..2589
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABT17496.1"
		     /db_xref="GI:155206429"
		     /translation="MKVKETRKNYQHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
		     PVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVTNANNSKTNISRIEEKGEIKNC
		     SFNITTRIRDKKRKESALFYKLDVVPITNDNNNTNNTSYRMIHCNTSTITQACPKVTF
		     EPIPIHYCAPAGFALLKCNNKTFSGSGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
		     DVVVRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKGIHLGPGKFWTTGEIIGDIRQ
		     AHCNLSRADWNQTLEQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCNS
		     TKLFNSTWNSDGTRNGSDKPPETIITLPCRIKQIVNMWQEVGRAMYAPPISGQIRCSS
		     NITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKAK
		     RRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAQARQLLSGIVQQQNNLLRAIE
		     AQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRS
		     LDQIWNNMTWMEWEREIDNYTSLIYTLIEESQNQQEKNEQELLALDKWASLWNWFDIT
		     NWLWYIKLFIMIVGGLIGLRIIFAVLSVVNRVRQGYSPLSFQTHLPAPRGPDRPEETE
		     GEGGERDRDRSTRLVSGFFPLIWDDLRSLCLFSYHRLRDLLLIVVRIVEILGHRGWEI
		     LKYWGNLLQYWSQEIKKSAVSLLNATAIAVGEGTDRIIELVQRIFRAFLHIPRRIRQG
		     LERALL"
BASE COUNT	912 a	 438 c	  601 g    638 t
ORIGIN
       1 atgaaagtga aggagaccag gaagaattat cagcacttgt ggacatgggg caccatgctc 
      61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc 
     121 tattatgggg tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaagcatatg atccagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac 
     301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca 
     361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttactaat 
     421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt 
     481 tctttcaata ttaccacaag aataagagat aaaaagagga aagaatctgc acttttttat 
     541 aaacttgatg tagtaccaat aacaaatgat aataataata ctaataatac tagctatagg 
     601 atgatacatt gtaacacctc aacaattaca caggcctgtc caaaggtaac ctttgaacca 
     661 attcccatac attactgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca 
     721 ttcagtggat caggaccatg tacaaatgtc agtacagtac aatgtacaca tggaattaag 
     781 ccagtagtgt caactcaact gttactaaat ggcagtctag cagaagaaga tgtagtagtt 
     841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta 
     901 gaaattaatt gtacaagacc caacaacaat acaagaaaag gtatacatct aggaccaggg 
     961 aaattttgga caacaggaga aataatagga gatataagac aagcacattg taaccttagt 
    1021 agagcagact ggaatcaaac tttagaacag gtagttaaaa aattagggga acaatttagg 
    1081 aataaaacaa tagtctttaa gccatcctca ggaggggacc tagaagttgt aatgcacatt 
    1141 tttaattgta gaggagaatt tttctactgt aattcaacaa aactgtttaa tagtacttgg 
    1201 aatagtgatg gtactagaaa tggtagtgat aagccacctg aaacaattat cacactccca 
    1261 tgtagaataa aacaaattgt aaacatgtgg caggaagtag gaagagcaat gtatgcccct 
    1321 cccatcagtg gacagattag gtgctcatca aatattacag ggctgatatt aacaagagat 
    1381 ggtggcaaag gtgataacat cactaacaac accgagatct tcagacctgg aggaggaaat 
    1441 atgcaggaca attggagaag tgaattatat aaatataagg tagtacaaat tgaaccatta 
    1501 ggaatagcac ccaccaaggc aaagagaaga gtggtgcaaa gagaaaaaag agcagtgggg 
    1561 ataggagctg tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca 
    1621 atagcgctga cggcacaggc cagacaattg ttgtctggta tagtgcaaca gcagaacaat 
    1681 ctgctgagag ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag 
    1741 cagctccagg caagagtcct ggctgtggaa agatacctaa aggatcaaca gctcctaggg 
    1801 atatggggtt gctctggaaa actcatttgc accactactg tgccttggaa tagtagttgg 
    1861 agtaacagat ctttggacca gatttggaat aacatgacct ggatggagtg ggaaagagaa 
    1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcaaaa ccagcaagaa 
    1981 aagaatgaac aagaattatt ggcattggat aagtgggcaa gtttgtggaa ttggtttgac 
    2041 ataacaaact ggttgtggta tataaaatta ttcataatga tagtaggagg cttaataggt 
    2101 ttaagaataa tttttgctgt actttctgta gtgaatagag ttaggcaggg atactcacca 
    2161 ttgtcatttc agacccacct cccagccccg aggggacccg acaggccaga agaaacagaa 
    2221 ggagaaggtg gagagagaga cagagacaga tccactcgat tagtcagcgg attctttcca 
    2281 cttatctggg acgatctacg gagcctgtgc ctcttcagct accaccgctt gagagactta 
    2341 ctcttgattg tagtgaggat tgtggaaatt ctgggacaca gggggtggga aatcctcaag 
    2401 tactggggga atctcctgca gtattggagt caggagataa agaagagtgc tgttagcttg 
    2461 ctcaacgcca cagccatagc agtaggtgag ggaacagata ggattataga attagtacaa 
    2521 agaattttta gagcttttct ccatatacct agaagaataa gacagggctt agaaagggct 
    2581 ttgctataa
//
last modified: Tue May 31 10:56 2022


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