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LOCUS	    EF440710		    2589 bp    DNA     linear	VRL 16-MAY-2008
DEFINITION  HIV-1 clone JHU559_MEN_A11 from USA envelope glycoprotein (env)
	    gene, complete cds
ACCESSION   EF440710
VERSION     EF440710.1 GI:155206414
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2589)
            Show all sequences for reference 1
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Characterization of the follicular dendritic cell reservoir of
	    human immunodeficiency virus type 1
  JOURNAL   J. Virol. 82 (11), 5548-5561 (2008)
  PUBMED    18385252
REFERENCE   2 (bases 1 to 2589)
            Show all sequences for reference 2
  AUTHORS   Keele,B.F., Tazi,L., Gartner,S., Liu,Y., Burgon,T.B., Estes,J.D.,
	    Thacker,T.C., Crandall,K.A., McArthur,J.C. and Burton,G.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (15-FEB-2007) Chemistry and Biochemistry, Brigham Young
	    University, C211A BNSN, Provo, UT 84602, USA
FEATURES             Location/Qualifiers
     source	     1..2589
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="JHU559"
		     /isolation_source="uncultured meningeal tissue from brain"
		     /db_xref="taxon:11676"
		     /clone="JHU559_MEN_A11"
		     /country="USA: MD"
     gene	     1..2589
		     /gene="env"
     CDS	     1..2589
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABT17489.1"
		     /db_xref="GI:155206415"
		     /translation="MKVKETRKNYPHLWTWGTMLLGMLMICSAAKNAKGLWVTVYYGV
		     PVWKEATTTLFCASDAKAYDPEVHNVWATHACVPTDPNPQEVVLANVTENFNMWKNNM
		     VEQMHEDIISLWDQSLKPCVKLTPLCVTLHCTDLNVINANNSKTNISRIEEKGEIKNC
		     SFNITTRIKDKKRKESALFYKLDVVPITNDNNNTNNTSYRMVHCNTSTITQACPKVTF
		     EPIPIHYCAPAGFALLKCNNKTFSGLGPCTNVSTVQCTHGIKPVVSTQLLLNGSLAEE
		     DVVIRSENFTNNLKTIIVQLNKSVEINCTRPNNNTRKGIHIGPGSFWTTGEVIEDIRQ
		     AHCNLSRADWNQTLKQVVKKLGEQFRNKTIVFKPSSGGDLEVVMHIFNCRGEFFYCNS
		     TKLFNSTWNSDGTRNGSEKPPETIITLPCRIKQIVNMWQEVGRAMYAPPISGQIRCSS
		     NITGLILTRDGGKGDNITNNTEIFRPGGGNMQDNWRSELYKYKVVQIEPLGIAPTKAK
		     RRVVQREKRAVGIGAVFLGFLGAAGSTMGAASIALTAQARQLLSGIVQQQNNLLRAIE
		     AQQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTTVPWNSSWSNRS
		     LEQIWNNMTWMEWEREIDNYTSLIYTLIEESQNQQEKNEQELLALDKWASLWNWFDIT
		     NWLWYIKLFIMIVGGLIGLRIIFSALSIVNRVRQGYSPLSFQTHLPTPRGPDRPEETE
		     GEGGERDRDRSTRLVSGFFPLIWDDLRSLCLFSYHRLRDLLLIVARIVEILGHRGWEI
		     LKYWGNLLQYWSREIKKSAVSLLNATAIAVAEGTDRIIEVVQRIFRAFLHIPRRIRQG
		     LERALL"
BASE COUNT	917 a	 447 c	  595 g    630 t
ORIGIN
       1 atgaaagtga aggagaccag gaagaattat ccgcacttgt ggacatgggg caccatgctc 
      61 cttgggatgt tgatgatctg tagtgctgca aaaaatgcaa aagggttgtg ggttacagtc 
     121 tattatgggg tacctgtgtg gaaagaagca actaccactc tattttgtgc atcagatgct 
     181 aaagcatatg atccagaggt acataatgtt tgggccacac atgcctgtgt acccacagac 
     241 cccaacccac aagaagtagt attggcaaat gtgacagaga attttaatat gtggaaaaac 
     301 aacatggtgg aacagatgca tgaggatata atcagtttgt gggatcaaag tctaaagcca 
     361 tgtgtaaaat taactccact ctgtgttact ttacattgca ctgatctgaa tgttattaat 
     421 gctaataata gcaagaccaa tattagtagg atagaagaaa aaggagaaat aaaaaattgt 
     481 tctttcaata ttaccacaag aataaaagat aaaaagagga aagaatctgc acttttttat 
     541 aaacttgatg tagtaccaat aacaaatgat aataataata ctaataatac tagctatagg 
     601 atggtccatt gtaacacctc aacaattaca caggcctgtc caaaggtaac ctttgaacca 
     661 attcccatac attactgtgc cccggctggt tttgcgcttc taaaatgtaa taataagaca 
     721 ttcagtggat taggaccatg tacaaatgtc agcacagtac aatgtacaca tggaattaag 
     781 ccagtagtgt caactcaact gttactaaat ggcagtctag cagaagaaga tgtagtaatt 
     841 agatctgaaa atttcacgaa taatcttaaa accataatag tacagctgaa caaatctgta 
     901 gaaattaatt gtacaagacc caacaacaat acaagaaaag gtatacatat aggaccaggg 
     961 agcttttgga caacaggaga agtaatagaa gatataagac aagcacattg taaccttagt 
    1021 agagcagact ggaatcaaac tttaaaacag gtagttaaaa aattagggga acaatttagg 
    1081 aataaaacaa tagtctttaa gccatcctca ggaggggacc tagaagttgt aatgcacatt 
    1141 tttaattgta gaggagaatt tttctactgt aattcaacaa aactgtttaa tagtacttgg 
    1201 aatagtgatg gtactagaaa tggtagtgaa aagccacccg aaacaattat cacactccca 
    1261 tgtagaataa aacaaattgt aaacatgtgg caggaagtag gaagagcaat gtatgcccct 
    1321 cccatcagtg gacagattag gtgctcatca aatattacag ggctgatatt aacaagagat 
    1381 ggtggcaaag gtgacaacat caccaacaac accgagatct tcagacctgg aggaggaaat 
    1441 atgcaggaca attggagaag tgaattatat aaatataagg tagtacaaat tgaaccatta 
    1501 ggaatagcac ccaccaaggc aaagagaaga gtggtgcaaa gagaaaaaag agcagtggga 
    1561 ataggagctg tgttccttgg gttcttggga gcagcaggaa gcactatggg cgcagcgtca 
    1621 atagcgctga cggcacaggc cagacaattg ttgtctggta tagtgcaaca gcagaacaat 
    1681 ctgctgagag ctattgaggc gcaacagcat ctgttgcaac tcacagtctg gggcatcaag 
    1741 cagctccagg caagagtcct ggctgtggaa agatacctaa aggatcaaca gctcctaggg 
    1801 atatggggtt gctctggaaa actcatttgc accactactg tgccttggaa tagtagttgg 
    1861 agtaacagat ctttggaaca gatttggaat aacatgacct ggatggagtg ggaaagagaa 
    1921 attgacaatt acacaagctt aatatacacc ttaattgaag aatcgcaaaa ccagcaagaa 
    1981 aagaatgaac aagaattatt ggcattagat aagtgggcaa gtttatggaa ttggtttgac 
    2041 ataacaaact ggctgtggta tataaaatta ttcataatga tagtaggagg cttaataggt 
    2101 ttaagaataa ttttttctgc actttctata gtgaatagag ttaggcaggg atactcacca 
    2161 ttgtcatttc agacccacct cccaaccccg aggggacccg acaggccaga agaaacagaa 
    2221 ggagaaggtg gagagagaga cagagacaga tccactcgat tagtcagcgg attctttcca 
    2281 cttatctggg acgatctacg gagcctgtgc ctcttcagct accaccgctt gagagactta 
    2341 ctcttgatcg tagcgaggat tgtggaaatt ctgggacaca gggggtggga aatcctcaag 
    2401 tactggggga atctcctgca gtattggagt cgggagataa agaagagtgc cgttagcttg 
    2461 ctcaacgcca cagccatagc agtagctgag ggaacagata ggattataga agtagtacaa 
    2521 agaattttta gagcttttct ccatatacct agaagaataa gacagggctt agaaagggct 
    2581 ttgctataa
//
last modified: Tue May 31 10:56 2022


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