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LOCUS EF432678 895 bp RNA linear VRL 01-OCT-2007
DEFINITION HIV-1 isolate fj45 from China pol protein (pol) gene, partial cds
ACCESSION EF432678
VERSION EF432678.1 GI:151337607
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Liu,J., Yue,J., Wu,S. and Yan,Y.
TITLE Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
strains circulating in Fujian Province, China
JOURNAL Arch. Virol. 152 (10), 1799-1805 (2007)
PUBMED 17619115
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Liu,J., Yue,J. and Yan,Y.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT drived from drug naive patient.
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="fj45"
/isolation_source="drug naive patient"
/db_xref="taxon:11676"
/country="China: Fujian Province"
/note="subtype: CRF01_AE"
gene <1..>895
/gene="pol"
/note="HXB2 2253-3347"
CDS <1..>895
/gene="pol"
/note="protease and 5'' end of reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABS01236.1"
/db_xref="GI:151337608"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGSVLVGPTPVNIIGRNMLTQLGCTLNFPIS
PIDTVPVTLKPGMDGPKVKQWPLTEEKIKALTEICKEMEEEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQTSMTKILEPFRIKNPE
IVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT 355 a 140 c 184 g 216 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa aaataggagg acagctgaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagacataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggtt cagtgttagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagcttg gatgtacttt aaatttccca
301 attagtccta ttgacactgt accagtaaca ttaaagccag gaatggatgg accaaaggtt
361 aaacagtggc cattgacaga agaaaaaata aaagcattaa cagaaatttg taaagaaatg
421 gaagaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaggacag caccaaatgg aggaaattag tagatttcag agagctcaat
541 aaaagaactc aggatttttg ggaagttcaa ttaggaatac cacatccagc aggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggggatgcat atttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaacaatga gacaccagga
721 atcagatatc agtacaatgt gctgccacag ggatggaaag gatcaccggc aatattccag
781 actagcatga caaaaatctt agagcccttt agaataaaaa atccagaaat agttatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022