View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EF432672 895 bp RNA linear VRL 01-OCT-2007
DEFINITION HIV-1 isolate fj26 from China pol protein (pol) gene, partial cds
ACCESSION EF432672
VERSION EF432672.1 GI:151337595
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Liu,J., Yue,J., Wu,S. and Yan,Y.
TITLE Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
strains circulating in Fujian Province, China
JOURNAL Arch. Virol. 152 (10), 1799-1805 (2007)
PUBMED 17619115
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Liu,J., Yue,J. and Yan,Y.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT drived from drug naive patient.
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="fj26"
/isolation_source="drug naive patient"
/db_xref="taxon:11676"
/country="China: Fujian Province"
/note="subtype: CRF01_AE"
gene <1..>895
/gene="pol"
/note="HXB2 2253-3347"
CDS <1..>895
/gene="pol"
/note="protease and 5'' end of reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABS01230.1"
/db_xref="GI:151337596"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVFEDINLPGKWKP
KMIGGIGGFIRVRQYDQIPIEICGKKAVGTVLVGPTPVNIIGRNMLTQIGCTFKFPIS
PIDTVPVTLKPGMDGPKGIQWPLAEEKIKALTEICKEMEEEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
IVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT 349 a 137 c 191 g 218 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagttaaaa
61 gaagctctat tagatacagg agcagatgat acagtatttg aagatataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcagggtaag acaatatgat
181 cagataccta tagaaatttg tggaaaaaag gctgtaggta cagtgttagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg ggtgtacttt taaatttcca
301 attagtccta ttgacactgt accagtaaca ttaaagccag gaatggatgg accaaagggt
361 atacagtggc cattggcaga agaaaaaata aaagcattaa cagaaatttg taaagaaatg
421 gaagaggaag ggaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaagacag caccaaatgg aggaaattag tagatttcag agagctcaat
541 aaaagaactc aggacttttg ggaagttcaa ttaggaatac cgcatccagc aggtttaaaa
601 aagaaaaaat cagtaactgt actagatgtg ggagatgcat atttttcagt tcctttagat
661 gaaaacttta gaaagtatac tgcattcacc atacctagta caaacaatga gacaccagga
721 atcagatatc agtataatgt gctgccacag ggatggaaag gatcaccggc aatattccag
781 agtagcatga caaaaatctt agagcccttt agaataaaaa atccggagat agttatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022