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LOCUS EF432671 895 bp RNA linear VRL 01-OCT-2007
DEFINITION HIV-1 isolate fj25 from China pol protein (pol) gene, partial cds
ACCESSION EF432671
VERSION EF432671.1 GI:151337593
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Liu,J., Yue,J., Wu,S. and Yan,Y.
TITLE Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
strains circulating in Fujian Province, China
JOURNAL Arch. Virol. 152 (10), 1799-1805 (2007)
PUBMED 17619115
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Liu,J., Yue,J. and Yan,Y.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT drived from drug naive patient.
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="fj25"
/isolation_source="drug naive patient"
/db_xref="taxon:11676"
/country="China: Fujian Province"
/note="subtype: CRF01_AE"
gene <1..>895
/gene="pol"
/note="HXB2 2253-3347"
CDS <1..>895
/gene="pol"
/note="protease and 5'' end of reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABS01229.1"
/db_xref="GI:151337594"
/translation="PQITLWQRPLVTVKIGGQLREALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVSIIGRNMLTQLGCTLNFPIS
PIDTVPAKLKPGMDGPKVKQWPLTEEKIRALTEICKEMEEEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
IVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT 353 a 138 c 190 g 214 t
ORIGIN
1 cctcaaatca ctctttggca gcgacccctt gtcacagtaa aaataggagg gcagctaaga
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag gcaatatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcagca taattggacg aaatatgttg actcagcttg gttgtacttt aaatttccca
301 attagtccta ttgacactgt accagcaaaa ttaaagccag gaatggatgg accaaaggtt
361 aaacagtggc cattgacaga agaaaaaata agagcattaa cagaaatttg taaagaaatg
421 gaagaggaag gaaaaatctc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaggacag caccaaatgg agaaaattag tagatttcag agagctcaat
541 aaaaggactc aagacttttg ggaagttcaa ttaggaatac cacatccagc aggtttaaag
601 aagaaaaaat cagtaacagt actggatgtg ggagatgcat atttttcagt tcctttagat
661 gaaagcttta gaaagtatac tgcatttacc ataccgagta taaacaatga gacaccaggg
721 atcagatatc agtacaatgt gctgccacag ggatggaaag gatcaccagc aatattccag
781 agtagcatga caaaaatctt agagcccttt agaataaaaa atccagaaat agttatctat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022