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LOCUS EF432663 895 bp RNA linear VRL 01-OCT-2007
DEFINITION HIV-1 isolate fj08 from China pol protein (pol) gene, partial cds
ACCESSION EF432663
VERSION EF432663.1 GI:151337577
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 895)
Show all sequences for reference 1
AUTHORS Liu,J., Yue,J., Wu,S. and Yan,Y.
TITLE Polymorphisms and drug resistance analysis of HIV-1 CRF01_AE
strains circulating in Fujian Province, China
JOURNAL Arch. Virol. 152 (10), 1799-1805 (2007)
PUBMED 17619115
REFERENCE 2 (bases 1 to 895)
Show all sequences for reference 2
AUTHORS Liu,J., Yue,J. and Yan,Y.
TITLE Direct Submission
JOURNAL Submitted (11-FEB-2007) Department of Clinical Laboratory, Shanghai
Pulmonary Hospital, NO.507 Zhengmin Road, Shanghai 200433, China
COMMENT drived from drug naive patient.
FEATURES Location/Qualifiers
source 1..895
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="fj08"
/isolation_source="drug naive patient"
/db_xref="taxon:11676"
/country="China: Fujian Province"
/note="subtype: CRF01_AE"
gene <1..>895
/gene="pol"
/note="HXB2 2253-3347"
CDS <1..>895
/gene="pol"
/note="protease and 5'' end of reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABS01221.1"
/db_xref="GI:151337578"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEINLPGKWKP
KMIGGIGGFIKVRQYDQILIEICGKKAIGTVLVGPTPVNIIGRNMLTQIGCTLNIPIS
PIDTVPVALKPGMDGPKVKQWPLTEEKIKALTENCEEMEKEGKISKNGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDESFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRIKNPE
IVIYQYMDDLYVGSDLEIGQHR"
BASE COUNT 355 a 139 c 186 g 215 t
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacagtaa aaataggagg acagctgaaa
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaataaa tttgccagga
121 aaatggaaac caaaaatgat agggggaatt ggaggtttta ttaaagtaag acaatatgat
181 cagatactta tagaaatttg tggaaaaaag gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggacg aaatatgttg actcagattg ggtgtacttt aaatattccc
301 attagtccta ttgacactgt accagtagca ttaaagcccg gaatggatgg acccaaggtt
361 aaacagtggc cactgacaga agaaaaaata aaagcattaa cagaaaattg tgaagagatg
421 gaaaaggaag gaaaaatctc aaaaaatggg cctgaaaatc catataatac tccagtattt
481 gctataaaga aaaaggacag cactaaatgg aggaaattag tagatttcag ggagcttaat
541 aaaagaactc aagacttttg ggaagttcaa ttaggaatac cgcatccagc aggtttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggagatgcat atttttcagt tcctctagat
661 gaaagcttta gaaagtatac tgcattcacc atacctagta taaacaatga gacacccgga
721 atcagatatc aatacaatgt gctgccacag ggatggaaag gatcaccggc aatattccag
781 agtagcatga caaaaatttt agagcccttt agaataaaaa accccgaaat agttatttat
841 caatacatgg atgacttgta tgtaggatct gatttagaaa tagggcagca cagaa
//
last modified: Tue May 31 10:56 2022