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LOCUS EF193933 1129 bp RNA linear VRL 02-MAY-2007
DEFINITION HIV-1 isolate CH42 from Chile pol protein (pol) gene, partial cds
ACCESSION EF193933
VERSION EF193933.1 GI:145982475
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1129)
Show all sequences for reference 1
AUTHORS Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P., de
Parga,E.V., Yung,V., Thomson,M.M. and Najera,R.
TITLE Antiretroviral drug resistance and phylogenetic diversity of HIV-1
in Chile
JOURNAL J. Med. Virol. 79 (6), 647-656 (2007)
PUBMED 17457921
REFERENCE 2 (bases 1 to 1129)
Show all sequences for reference 2
AUTHORS Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P.,
Vazquez de Parga,E., Yung,V., Thomson,M. and Najera,R.
TITLE Direct Submission
JOURNAL Submitted (21-DEC-2006) Patogenia Viral, Instituto de Salud Carlos
III, Ctra Majadahonda a Pozuelo, km 2, Majadahonda, Madrid 28220,
Spain
FEATURES Location/Qualifiers
source 1..1129
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="CH42"
/db_xref="taxon:11676"
/country="Chile"
gene <1..>1129
/gene="pol"
CDS <1..>1129
/gene="pol"
/note="PR-RT"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABQ01012.1"
/db_xref="GI:145982476"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMALPGRWKP
KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTEIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
XVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYPGIKVX"
BASE COUNT 436 a 182 c 237 g 266 t 8 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatggc tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagataccta tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actgagattg gctgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaar ttaaagccag gaatggatgg cccaaaagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcctctagat
661 gaaaacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacgccagga
721 attagatatc agtayaatgt gcttccacag ggrtggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatcct agagcctttt agaaaacaaa atccagacat rgttatctay
841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa
901 gtagaggaac tgagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccattcct ttggatgggt taygaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaargaaagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttat ccagggatta aagtaargc
//
last modified: Tue May 31 10:56 2022