HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    EF193933		    1129 bp    RNA     linear	VRL 02-MAY-2007
DEFINITION  HIV-1 isolate CH42 from Chile pol protein (pol) gene, partial cds
ACCESSION   EF193933
VERSION     EF193933.1 GI:145982475
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1129)
            Show all sequences for reference 1
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P., de
	    Parga,E.V., Yung,V., Thomson,M.M. and Najera,R.
  TITLE     Antiretroviral drug resistance and phylogenetic diversity of HIV-1
	    in Chile
  JOURNAL   J. Med. Virol. 79 (6), 647-656 (2007)
  PUBMED    17457921
REFERENCE   2 (bases 1 to 1129)
            Show all sequences for reference 2
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P.,
	    Vazquez de Parga,E., Yung,V., Thomson,M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2006) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra Majadahonda a Pozuelo, km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1129
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH42"
		     /db_xref="taxon:11676"
		     /country="Chile"
     gene	     <1..>1129
		     /gene="pol"
     CDS	     <1..>1129
		     /gene="pol"
		     /note="PR-RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABQ01012.1"
		     /db_xref="GI:145982476"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMALPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTEIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDENFRKYTAFTIPSTNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     XVIYQYMDDLYVGSDLEIGQHRTKVEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPEKESWTVNDIQKLVGKLNWASQIYPGIKVX"
BASE COUNT	436 a	 182 c	  237 g    266 t      8 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatggc tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagataccta tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actgagattg gctgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaar ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaag 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcctctagat 
     661 gaaaacttca ggaagtatac tgcatttacc atacctagta caaacaatga gacgccagga 
     721 attagatatc agtayaatgt gcttccacag ggrtggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatcct agagcctttt agaaaacaaa atccagacat rgttatctay 
     841 caatacatgg atgatttgta tgtaggatct gatttagaaa tagggcaaca tagaacaaaa 
     901 gtagaggaac tgagacaaca tctgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ctccattcct ttggatgggt taygaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaargaaagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat ccagggatta aagtaargc
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health