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LOCUS	    EF193903		    1129 bp    RNA     linear	VRL 02-MAY-2007
DEFINITION  HIV-1 isolate CH18 from Chile pol protein (pol) gene, partial cds
ACCESSION   EF193903
VERSION     EF193903.1 GI:145982415
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1129)
            Show all sequences for reference 1
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P., de
	    Parga,E.V., Yung,V., Thomson,M.M. and Najera,R.
  TITLE     Antiretroviral drug resistance and phylogenetic diversity of HIV-1
	    in Chile
  JOURNAL   J. Med. Virol. 79 (6), 647-656 (2007)
  PUBMED    17457921
REFERENCE   2 (bases 1 to 1129)
            Show all sequences for reference 2
  AUTHORS   Rios,M., Delgado,E., Perez-Alvarez,L., Fernandez,J., Galvez,P.,
	    Vazquez de Parga,E., Yung,V., Thomson,M. and Najera,R.
  TITLE     Direct Submission
  JOURNAL   Submitted (21-DEC-2006) Patogenia Viral, Instituto de Salud Carlos
	    III, Ctra Majadahonda a Pozuelo, km 2, Majadahonda, Madrid 28220,
	    Spain
FEATURES             Location/Qualifiers
     source	     1..1129
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="CH18"
		     /db_xref="taxon:11676"
		     /country="Chile"
     gene	     <1..>1129
		     /gene="pol"
     CDS	     <1..>1129
		     /gene="pol"
		     /note="PR-RT"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABQ00982.1"
		     /db_xref="GI:145982416"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEDMNLPGRWKP
		     KMIGGIGGFIKVRQYDQIPIEICGHKAIGTVLVGPTPVNIIGRNLMTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKNKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPG
		     IVIYQYMDDLYVGSDLEIGQHRAKVEELRQHLFKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPITLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVK"
BASE COUNT	434 a	 188 c	  242 g    264 t      1 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa aggtaggggg gcagctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 agatggaagc caaaaatgat agggggaatt ggaggtttta tcaaagtcag acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgatg actcagattg gctgtacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtc 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gagaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaayac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagacttcag agaacttaac 
     541 aagagaactc aagacttctg ggaagttcag ttaggaatac cacatcctgc agggttaaaa 
     601 aagaacaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagac 
     661 aaagacttta gaaagtatac tgcatttact atacctagta taaacaatga gacaccaggg 
     721 attaggtatc agtacaatgt acttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agagcctttt agaaaacaaa atccaggaat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa taggacagca tagagcaaaa 
     901 gtagaggaac tgagacagca tctgtttaag tggggattta ccacgccaga caaaaaacat 
     961 cagaaagaac ccccattcct ttggatgggt tatgaactcc atcctgataa atggacagtg 
    1021 cagcctataa cgctgccaga aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttat gcagggatta aagtaaaac
//
last modified: Tue May 31 10:56 2022


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