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LOCUS EF159971 2586 bp DNA linear VRL 09-NOV-2007
DEFINITION HIV-1 isolate H3 from USA envelope glycoprotein (env) gene,
complete cds
ACCESSION EF159971
VERSION EF159971.1 GI:131059727
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2586)
Show all sequences for reference 1
AUTHORS Gilbert,M.T.P., Rambaut,A., Wlasiuk,G., Spira,T.J., Pitchenik,A.E.
and Worobey,M.
TITLE The emergence of HIV/AIDS in the Americas and beyond.
JOURNAL Proc. Natl. Acad. Sci. U. S. A.. 104(47); 18566-70 (2007)
PUBMED 17978186
REFERENCE 2 (bases 1 to 2586)
Show all sequences for reference 2
AUTHORS Gilbert,M.T.P., Rambaut,A., Wlasiuk,G., Spira,T.J., Pitchenik,A.E.
and Worobey,M.
TITLE Direct Submission
JOURNAL Submitted (17-NOV-2006) Ecology and Evolutionary Biology,
University of Arizona, 1041 E. Lowell St., Tucson, AZ 85721, USA
FEATURES Location/Qualifiers
source 1..2586
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="H3"
/isolation_source="Haitian immigrant"
/db_xref="taxon:11676"
/country="USA"
/collection_date="11-May-1982"
/note="subtype: B"
gene 1..2586
/gene="env"
CDS 1..2586
/gene="env"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABO33021.1"
/db_xref="GI:131059728"
/translation="MRVKEMRKHWQHLWRGGTLLLGMLMICSAVQNLWVTVYYGVPVW
KEASTTLFCASDAKAYDTEVHNVWATHACVPTDPNPQEVVLVNVTENFNIWKNTMVEQ
MHEDIISLWDQSLKPCVKLTPLCVTLNCTNAKVGNGTNANRNNTTNNSTMKEGEMKNC
SFKITTPVRDKVQKEYALFYDLDVVPIKDNDNNDNSSYRSYRLINCNTSVITQACPKV
SFEPIPIHYCAPAGFAILKCNDKKFNGTGPCKNVSTVQCTHGIRPVVSTQLLLNGSLA
EEEIVIRSENLTDNAKTIIVQLNKSVEINCIRPNNNTRKSIHIAPGRAFYGTDIIGDI
RKAYCNISRKDWNNTLEQVVTKLRELFKNKTIIFNSSSGGDPEIVFHSFNCGGEFFYC
NTTQLFNSTWNSSGSRIEGSNNTEQNITLPCRIKQIINMWQEVGKAMYAPPIQGQIKC
SSNITGLLLTRDGGNNNTNETFRPGGGYMKDNWRSELYKYKVVKIEPLGVAPTMAKRR
VVQREKRAVGALGAMFLGFLGAAGSTMGAASMALTVQARQLLSGIVQQQNNLLRAIEA
QQHLLQLTVWGIKQLQARVLAVERYLKDQQLLGIWGCSGKLICTTAVPWNASWSNKSY
NEIWDNMTWMEWEREIDNYTGLIYTLIEQSQNQQEKNEQELLELDKWDSLWNWFSITN
WLWYIKIFIMIVGGLIGLRIVFTVLSIVNRVRQGYSPLSFQTHLPAPRGPDRPEGIEE
EGGERDRDRSTRLVHGFLALIWDDLRSLCLFSYHRLRDLLLIVARIVELLGRRGWEAL
KYWGNLLQYWRQELKSSAVSLLNATAIAVGEGTDRIIEAARRIFRAFLHIPRRIRQGL
ERALL"
BASE COUNT 911 a 429 c 604 g 642 t
ORIGIN
1 atgagagtga aggagatgag gaagcattgg cagcacttgt ggagaggggg caccttgctc
61 cttgggatgt tgatgatctg tagtgctgta caaaacttgt gggtcacagt ctattatggg
121 gtacctgtgt ggaaagaagc atccaccact ctattttgtg catcagatgc aaaagcatat
181 gacacagagg tacataatgt ctgggccaca catgcctgtg tacccacaga ccccaaccca
241 caagaagtag tattggtaaa tgtgacagaa aattttaaca tatggaaaaa taccatggta
301 gaacagatgc atgaggatat aatcagttta tgggatcaaa gcctaaagcc atgtgtaaaa
361 ttaaccccac tctgtgttac tttaaattgc actaatgcta aggtggggaa tggtactaat
421 gccaatagaa ataatactac taataatagc acaatgaagg aaggagaaat gaaaaactgc
481 tctttcaaga tcaccacacc tgtaagagat aaggtgcaga aagaatatgc attattttat
541 gaccttgatg tagtaccaat aaaggataat gataataatg ataatagtag ctatagaagt
601 tatagattga taaattgtaa tacctcagtc attacccaag cctgtccaaa ggtatccttt
661 gagccaattc ccatacatta ttgtgccccg gctggttttg cgattctaaa atgtaatgat
721 aagaagttca atggaacagg accatgtaaa aatgtcagca cagtacaatg tacacatgga
781 attaggccag tagtgtcaac tcaactgctg ttaaatggca gtctagcaga agaagagata
841 gtaattagat ctgaaaatct cacggacaat gctaaaacca taatagtaca gctgaataaa
901 tctgtagaaa ttaattgtat aagacccaat aacaacacaa gaaaaagtat acatatagca
961 ccagggagag cattttatgg aacagacata ataggagata taagaaaagc atattgtaac
1021 attagtagaa aagattggaa taacacttta gaacaagtag ttacaaaatt aagagaacta
1081 tttaagaata aaacaataat ctttaattca tcctcaggag gggacccaga aattgtattt
1141 cacagtttta attgtggagg ggaatttttc tactgtaata caacacaact gtttaatagt
1201 acttggaata gttctgggag taggattgaa gggtcaaata acactgaaca aaatatcaca
1261 ctcccatgca gaataaaaca aattataaac atgtggcagg aagtaggaaa agcaatgtat
1321 gcccctccca tccagggaca aattaaatgt tcatcaaata ttacagggct gttattaaca
1381 agagatgggg gtaataataa tacaaacgag accttcagac ctggaggagg atatatgaag
1441 gacaattgga gaagtgaatt atataaatat aaagtagtaa aaattgaacc attaggagta
1501 gcacccacca tggcaaagag aagagtggtg caaagagaaa aaagagcagt gggagcatta
1561 ggagctatgt tccttgggtt cttgggagca gcaggaagca ctatgggcgc agcgtcaatg
1621 gcgctgacgg tacaggccag acaattattg tctggtatag tgcaacagca gaacaatttg
1681 ctgagagcta ttgaggcgca acagcatctg ttgcaactca cggtctgggg catcaaacag
1741 ctccaggcaa gagtcctggc tgtggaaaga tacctaaagg atcaacagct cctagggatt
1801 tggggttgct ctggaaaact catttgcacc actgctgtac cttggaatgc tagttggagt
1861 aataaatctt ataatgaaat ttgggataac atgacctgga tggagtggga aagggaaatt
1921 gacaattaca caggcttaat atacacctta attgaacaat cgcaaaatca gcaagaaaag
1981 aatgaacaag aattattaga attggataag tgggacagtt tgtggaattg gtttagtata
2041 acaaactggc tgtggtatat aaaaatattc ataatgatag taggaggctt aataggttta
2101 agaatagttt ttactgtact ttctatagtg aatagagtta ggcagggcta ctcaccatta
2161 tcatttcaga cccacctccc agctccgagg ggacccgaca ggccagaagg aatagaagaa
2221 gaaggtggag agagagacag agacagatcc actcgcttag tgcatggatt cttagcactc
2281 atctgggacg atctgcggag cctgtgcctc ttcagctacc accgcttgag agacttactc
2341 ttgattgtag cgaggattgt ggaacttctg ggacgcaggg ggtgggaagc cctcaagtat
2401 tgggggaatc tcctgcagta ttggagacag gaactaaaga gtagtgctgt tagcttgctt
2461 aatgccacag caatagcagt aggtgaaggg acagatagga ttatagaagc agcaagaaga
2521 atttttagag cttttctcca catacctaga cgaataagac agggcttgga aagggctttg
2581 ctataa
//
last modified: Tue May 31 10:56 2022