View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS EF066790 657 bp DNA linear VRL 07-MAY-2007
DEFINITION HIV-1 clone 2_v3_1A_4 from USA reverse transcriptase (pol) gene,
partial cds
ACCESSION EF066790
VERSION EF066790.1 GI:126035770
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 657)
Show all sequences for reference 1
AUTHORS Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Hughes,M.,
Havens,P., Purswani,M., Gaur,A.H. and Chadwick,E.G.
CONSRTM Pediatric AIDS Clinical Trials Group P1030 Team
TITLE Early Archiving and Predominance of Nonnucleoside Reverse
Transcriptase Inhibitor-Resistant HIV-1 among Recently Infected
Infants Born in the United States
JOURNAL J. Infect. Dis. 195 (10), 1402-1410 (2007)
PUBMED 17436219
REFERENCE 2 (bases 1 to 657)
Show all sequences for reference 2
AUTHORS Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Havens,P.,
Purswani,M., Gaur,A.H. and Chadwick,E.G.
CONSRTM Pediatric AIDS Clinical Trials Group P1030 Team
TITLE Direct Submission
JOURNAL Submitted (19-OCT-2006) Pediatrics, Johns Hopkins University School
of Medicine, 600 N. Wolfe Street, Baltimore, MD 21287, USA
FEATURES Location/Qualifiers
source 1..657
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="2"
/isolation_source="resting CD4 cells, time point 3"
/db_xref="taxon:11676"
/clone="2_v3_1A_4"
/country="USA"
/note="PACTG trial 1030"
gene <1..>657
/gene="pol"
CDS <1..>657
/gene="pol"
/codon_start="1"
/transl_table="1"
/product="reverse transcriptase"
/protein_id="ABN71747.1"
/db_xref="GI:126035771"
/translation="GPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDEDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFREQNPD
IVIYQYMDDLYVGSDLEIGQHRTKVEKLRQHLLKWGLTTPDKKHQKEPPFLWMGYELH
P"
BASE COUNT 263 a 110 c 132 g 152 t
ORIGIN
1 ggtccaaagg ttaaacaatg gccattaaca gaagaaaaaa taaaagcatt aatagaaatt
61 tgcacagaga tggaaaagga aggaaaaatt tcaaaaattg ggcctgaaaa tccatacaat
121 actccagtat ttgccataaa gaaaaaagac agtactaaat ggagaaaatt agtagatttc
181 agagaactta ataagagaac tcaagacttc tgggaggttc aattaggaat accccatcct
241 gcagggttaa aaaagaaaaa atcagtaaca gtactggatg tgggtgatgc atatttttca
301 gttcccttag atgaagactt caggaagtat actgccttta ccataccgag tatgaacaat
361 gagacaccag ggattagata tcagtacaat gtgctgccac agggatggaa aggatcacca
421 gcaatattcc aaagcagcat gacaaaaatc ttagagcctt ttagagaaca aaatccagac
481 atagttatct atcaatacat ggatgatttg tatgtaggat ctgacttaga aatagggcag
541 catagaacaa aagtagaaaa actgagacaa catctgttga agtggggact taccacacca
601 gataaaaaac atcagaaaga acctccattc ctttggatgg gttatgaact ccatcct
//
last modified: Tue May 31 10:56 2022