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LOCUS	    EF066790		     657 bp    DNA     linear	VRL 07-MAY-2007
DEFINITION  HIV-1 clone 2_v3_1A_4 from USA reverse transcriptase (pol) gene,
	    partial cds
ACCESSION   EF066790
VERSION     EF066790.1 GI:126035770
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 657)
            Show all sequences for reference 1
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Hughes,M.,
	    Havens,P., Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Early Archiving and Predominance of Nonnucleoside Reverse
	    Transcriptase Inhibitor-Resistant HIV-1 among Recently Infected
	    Infants Born in the United States
  JOURNAL   J. Infect. Dis. 195 (10), 1402-1410 (2007)
  PUBMED    17436219
REFERENCE   2 (bases 1 to 657)
            Show all sequences for reference 2
  AUTHORS   Persaud,D., Palumbo,P., Ziemniak,C., Chen,J., Ray,S.C., Havens,P.,
	    Purswani,M., Gaur,A.H. and Chadwick,E.G.
  CONSRTM   Pediatric AIDS Clinical Trials Group P1030 Team
  TITLE     Direct Submission
  JOURNAL   Submitted (19-OCT-2006) Pediatrics, Johns Hopkins University School
	    of Medicine, 600 N. Wolfe Street, Baltimore, MD 21287, USA
FEATURES             Location/Qualifiers
     source	     1..657
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="2"
		     /isolation_source="resting CD4 cells, time point 3"
		     /db_xref="taxon:11676"
		     /clone="2_v3_1A_4"
		     /country="USA"
		     /note="PACTG trial 1030"
     gene	     <1..>657
		     /gene="pol"
     CDS	     <1..>657
		     /gene="pol"
		     /codon_start="1"
		     /transl_table="1"
		     /product="reverse transcriptase"
		     /protein_id="ABN71747.1"
		     /db_xref="GI:126035771"
		     /translation="GPKVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDEDFRKYTAFTIPSMNNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFREQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKVEKLRQHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     P"
BASE COUNT	263 a	 110 c	  132 g    152 t
ORIGIN
       1 ggtccaaagg ttaaacaatg gccattaaca gaagaaaaaa taaaagcatt aatagaaatt 
      61 tgcacagaga tggaaaagga aggaaaaatt tcaaaaattg ggcctgaaaa tccatacaat 
     121 actccagtat ttgccataaa gaaaaaagac agtactaaat ggagaaaatt agtagatttc 
     181 agagaactta ataagagaac tcaagacttc tgggaggttc aattaggaat accccatcct 
     241 gcagggttaa aaaagaaaaa atcagtaaca gtactggatg tgggtgatgc atatttttca 
     301 gttcccttag atgaagactt caggaagtat actgccttta ccataccgag tatgaacaat 
     361 gagacaccag ggattagata tcagtacaat gtgctgccac agggatggaa aggatcacca 
     421 gcaatattcc aaagcagcat gacaaaaatc ttagagcctt ttagagaaca aaatccagac 
     481 atagttatct atcaatacat ggatgatttg tatgtaggat ctgacttaga aatagggcag 
     541 catagaacaa aagtagaaaa actgagacaa catctgttga agtggggact taccacacca 
     601 gataaaaaac atcagaaaga acctccattc ctttggatgg gttatgaact ccatcct
//
last modified: Tue May 31 10:56 2022


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