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LOCUS	    DQ853514		     709 bp    RNA     linear	VRL 20-OCT-2006
DEFINITION  HIV-1 isolate 15224.1 from USA nef protein (nef) gene, complete cds
ACCESSION   DQ853514
VERSION     DQ853514.1 GI:114802245
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 709)
            Show all sequences for reference 1
  AUTHORS   Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
	    McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
	    He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
	    McElrath,M.J. and Mullins,J.I.
  TITLE     Selection on the human immunodeficiency virus type 1 proteome
	    following primary infection
  JOURNAL   J. Virol. 80 (19), 9519-9529 (2006)
  PUBMED    16973556
REFERENCE   2 (bases 1 to 709)
            Show all sequences for reference 2
  AUTHORS   Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
	    McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
	    He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
	    McElrath,M.J. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2006) Microbiology, University of Washington, Box
	    358070, Seattle, WA 98195-8070, USA
FEATURES             Location/Qualifiers
     source	     1..709
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="15224.1"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="Feb-1999"
		     /note="patient PIC1362, A*0201, A*2501, B*1801, B*5101,
		     C*0102, and C*1203 subtype: B"
     gene	     50..673
		     /gene="nef"
     CDS	     50..673
		     /gene="nef"
		     /codon_start="1"
		     /transl_table="1"
		     /product="nef protein"
		     /protein_id="ABI81037.1"
		     /db_xref="GI:114802246"
		     /translation="MGGKWSKSSIIGWPKVRDRMRRAEPAAEGVGPASRDLERHGALT
		     SSNTATNNADCAWLEAQEEAGDVGFPVGPQVPLRPMTYKAAFDLSHFLKEKGGLEGLV
		     HSQRRQDILDLWVYHTQGFFPDWRNYTPGPGIRYPLTFGWCFKLVPVGPEEVEKANEG
		     EDNCLLHPMSQHGVDDPEKEVLVWKFDSRLALRHMAREVHPEYYKDC"
BASE COUNT	210 a	 149 c	  205 g    145 t
ORIGIN
       1 tacataccta gaagaataag acagggcttg gaaaggcttt tgctgtaaga tgggtggcaa 
      61 gtggtcaaaa agtagtataa ttggatggcc taaggtaaga gatagaatga gacgagctga 
     121 accagcagca gagggggtgg gaccagcatc tcgagacctg gaaagacatg gggcactcac 
     181 aagcagcaat acagcaacta ataatgctga ttgtgcctgg ctagaagcac aagaagaagc 
     241 aggagatgtg ggttttccag tcggacctca ggtaccctta cggccaatga cttacaaggc 
     301 agcttttgat ctcagccact ttttaaaaga aaagggggga ctggaagggc tagttcactc 
     361 ccaaaggaga caagatattc ttgatctgtg ggtctaccac acacaaggct tcttcccgga 
     421 ttggcggaac tacacaccag ggccagggat cagatatcca ctgacctttg gatggtgctt 
     481 caagctagta ccagttgggc cagaggaggt agaaaaggcc aatgaaggag aggacaactg 
     541 cttgttacac cctatgagcc agcatggggt ggatgaccca gagaaagaag tgttagtgtg 
     601 gaagtttgac agccgcctag cacttcgtca catggcccga gaggtgcatc cggagtacta 
     661 caaagactgc tgacatcgag ctttctacaa gggactttcc gctggggac
//
last modified: Tue May 31 10:56 2022


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