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LOCUS DQ853514 709 bp RNA linear VRL 20-OCT-2006
DEFINITION HIV-1 isolate 15224.1 from USA nef protein (nef) gene, complete cds
ACCESSION DQ853514
VERSION DQ853514.1 GI:114802245
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 709)
Show all sequences for reference 1
AUTHORS Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
McElrath,M.J. and Mullins,J.I.
TITLE Selection on the human immunodeficiency virus type 1 proteome
following primary infection
JOURNAL J. Virol. 80 (19), 9519-9529 (2006)
PUBMED 16973556
REFERENCE 2 (bases 1 to 709)
Show all sequences for reference 2
AUTHORS Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
McElrath,M.J. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2006) Microbiology, University of Washington, Box
358070, Seattle, WA 98195-8070, USA
FEATURES Location/Qualifiers
source 1..709
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="15224.1"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="USA"
/collection_date="Feb-1999"
/note="patient PIC1362, A*0201, A*2501, B*1801, B*5101,
C*0102, and C*1203 subtype: B"
gene 50..673
/gene="nef"
CDS 50..673
/gene="nef"
/codon_start="1"
/transl_table="1"
/product="nef protein"
/protein_id="ABI81037.1"
/db_xref="GI:114802246"
/translation="MGGKWSKSSIIGWPKVRDRMRRAEPAAEGVGPASRDLERHGALT
SSNTATNNADCAWLEAQEEAGDVGFPVGPQVPLRPMTYKAAFDLSHFLKEKGGLEGLV
HSQRRQDILDLWVYHTQGFFPDWRNYTPGPGIRYPLTFGWCFKLVPVGPEEVEKANEG
EDNCLLHPMSQHGVDDPEKEVLVWKFDSRLALRHMAREVHPEYYKDC"
BASE COUNT 210 a 149 c 205 g 145 t
ORIGIN
1 tacataccta gaagaataag acagggcttg gaaaggcttt tgctgtaaga tgggtggcaa
61 gtggtcaaaa agtagtataa ttggatggcc taaggtaaga gatagaatga gacgagctga
121 accagcagca gagggggtgg gaccagcatc tcgagacctg gaaagacatg gggcactcac
181 aagcagcaat acagcaacta ataatgctga ttgtgcctgg ctagaagcac aagaagaagc
241 aggagatgtg ggttttccag tcggacctca ggtaccctta cggccaatga cttacaaggc
301 agcttttgat ctcagccact ttttaaaaga aaagggggga ctggaagggc tagttcactc
361 ccaaaggaga caagatattc ttgatctgtg ggtctaccac acacaaggct tcttcccgga
421 ttggcggaac tacacaccag ggccagggat cagatatcca ctgacctttg gatggtgctt
481 caagctagta ccagttgggc cagaggaggt agaaaaggcc aatgaaggag aggacaactg
541 cttgttacac cctatgagcc agcatggggt ggatgaccca gagaaagaag tgttagtgtg
601 gaagtttgac agccgcctag cacttcgtca catggcccga gaggtgcatc cggagtacta
661 caaagactgc tgacatcgag ctttctacaa gggactttcc gctggggac
//
last modified: Tue May 31 10:56 2022