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LOCUS DQ853482 390 bp RNA linear VRL 20-OCT-2006
DEFINITION HIV-1 isolate 15397.1 from USA gag protein (gag) gene, partial cds
ACCESSION DQ853482
VERSION DQ853482.1 GI:114801525
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 390)
Show all sequences for reference 1
AUTHORS Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
McElrath,M.J. and Mullins,J.I.
TITLE Selection on the human immunodeficiency virus type 1 proteome
following primary infection
JOURNAL J. Virol. 80 (19), 9519-9529 (2006)
PUBMED 16973556
REFERENCE 2 (bases 1 to 390)
Show all sequences for reference 2
AUTHORS Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
McElrath,M.J. and Mullins,J.I.
TITLE Direct Submission
JOURNAL Submitted (03-JUL-2006) Microbiology, University of Washington, Box
358070, Seattle, WA 98195-8070, USA
FEATURES Location/Qualifiers
source 1..390
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="15397.1"
/isolation_source="plasma"
/db_xref="taxon:11676"
/country="USA"
/collection_date="Oct-2002"
/note="patient PIC1365, A*0101, A*0201, B*0801,
B*5001/5004, Cw*0602 and Cw*0701 subtype: B"
gene <1..>390
/gene="gag"
CDS <1..>390
/gene="gag"
/note="p17"
/codon_start="3"
/transl_table="1"
/product="gag protein"
/protein_id="ABI80088.1"
/db_xref="GI:114801526"
/translation="GELDRWEKIRLRPGGKKKYKLKHLVWASRELERFAVNPGLLETS
EGCRQILTQLQPSLQTGSEELKSVYNTVATLYCVHQRIDVKDTKEALDRIEEEQNKSK
KKAQQAAADTGNNSQVSQNYPIVQNLQ"
BASE COUNT 159 a 69 c 91 g 71 t
ORIGIN
1 ggggagaatt agatagatgg gagaaaattc ggttaaggcc aggaggaaag aaaaaatata
61 agctaaaaca tttagtatgg gcaagcaggg agctagaacg atttgcagtc aatcctggcc
121 tgttagaaac atcagaaggc tgtagacaaa tactgacaca gctacagcca tctcttcaga
181 caggatcaga agaacttaaa tcagtatata atacagtagc aaccctctat tgtgtacatc
241 aaaggataga tgtaaaagac accaaggaag ctttagacag gatagaggaa gagcaaaaca
301 aaagtaagaa aaaagcacag caagcagcag ctgacactgg aaacaacagt caggtcagcc
361 aaaattaccc tatagtgcag aaccttcagg
//
last modified: Tue May 31 10:56 2022