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LOCUS	    DQ853482		     390 bp    RNA     linear	VRL 20-OCT-2006
DEFINITION  HIV-1 isolate 15397.1 from USA gag protein (gag) gene, partial cds
ACCESSION   DQ853482
VERSION     DQ853482.1 GI:114801525
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 390)
            Show all sequences for reference 1
  AUTHORS   Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
	    McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
	    He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
	    McElrath,M.J. and Mullins,J.I.
  TITLE     Selection on the human immunodeficiency virus type 1 proteome
	    following primary infection
  JOURNAL   J. Virol. 80 (19), 9519-9529 (2006)
  PUBMED    16973556
REFERENCE   2 (bases 1 to 390)
            Show all sequences for reference 2
  AUTHORS   Liu,Y., McNevin,J., Cao,J., Zhao,H., Genowati,I., Wong,K.,
	    McLaughlin,S., McSweyn,M.D., Diem,K., Stevens,C.E., Maenza,J.,
	    He,H., Nickle,D.C., Shriner,D., Holte,S., Collier,A.C., Corey,L.,
	    McElrath,M.J. and Mullins,J.I.
  TITLE     Direct Submission
  JOURNAL   Submitted (03-JUL-2006) Microbiology, University of Washington, Box
	    358070, Seattle, WA 98195-8070, USA
FEATURES             Location/Qualifiers
     source	     1..390
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="15397.1"
		     /isolation_source="plasma"
		     /db_xref="taxon:11676"
		     /country="USA"
		     /collection_date="Oct-2002"
		     /note="patient PIC1365, A*0101, A*0201, B*0801,
		     B*5001/5004, Cw*0602 and Cw*0701 subtype: B"
     gene	     <1..>390
		     /gene="gag"
     CDS	     <1..>390
		     /gene="gag"
		     /note="p17"
		     /codon_start="3"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABI80088.1"
		     /db_xref="GI:114801526"
		     /translation="GELDRWEKIRLRPGGKKKYKLKHLVWASRELERFAVNPGLLETS
		     EGCRQILTQLQPSLQTGSEELKSVYNTVATLYCVHQRIDVKDTKEALDRIEEEQNKSK
		     KKAQQAAADTGNNSQVSQNYPIVQNLQ"
BASE COUNT	159 a	  69 c	   91 g     71 t
ORIGIN
       1 ggggagaatt agatagatgg gagaaaattc ggttaaggcc aggaggaaag aaaaaatata 
      61 agctaaaaca tttagtatgg gcaagcaggg agctagaacg atttgcagtc aatcctggcc 
     121 tgttagaaac atcagaaggc tgtagacaaa tactgacaca gctacagcca tctcttcaga 
     181 caggatcaga agaacttaaa tcagtatata atacagtagc aaccctctat tgtgtacatc 
     241 aaaggataga tgtaaaagac accaaggaag ctttagacag gatagaggaa gagcaaaaca 
     301 aaagtaagaa aaaagcacag caagcagcag ctgacactgg aaacaacagt caggtcagcc 
     361 aaaattaccc tatagtgcag aaccttcagg 
//
last modified: Tue May 31 10:56 2022


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