HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ832164		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132919 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832164
VERSION     DQ832164.1 GI:111053021
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132919"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03771.1"
		     /db_xref="GI:111053022"
		     /translation="PQITLWQRPLVTIKVGGQLKEALLDTGADDTVLEEMNLPGKWKP
		     KMIGGIGGFIKVRQYDQILVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSVNNETPGIRYQYNVLPQGWKGSPAIFQCSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIMLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVKQLCKLLRGAKALTEVI
		     PLTEEAELELAE"
BASE COUNT	476 a	 193 c	  257 g    286 t
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa aagtaggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 aaatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagatacttg tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 ccagtcaaca taattggaag aaatctgttg actcaaattg ggtgtacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag ggaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagattttag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccttagat 
     661 aaagacttca gaaagtatac tgcatttacc atacctagtg taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 tgtagcatga caaaaatctt agagcctttt agaaaacaaa atccagatat agttatctat 
     841 cagtacatgg atgatttgta tgtaggatct gacttagaaa tagggcaaca tagaacaaaa 
     901 atagaggaac tgagacaaca tttgttgagg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagaac ccccatttct ttggatgggt tatgaactcc accctgataa atggacagta 
    1021 cagcctataa tgctgccaga aaaagacagc tggactgtca atgacataca aaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttat gcagggatta aagtaaagca gttatgtaaa 
    1141 ctccttaggg gagccaaagc attgacagaa gtaataccac taacagaaga agcagagcta 
    1201 gaactggcag ag
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health