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LOCUS	    DQ832160		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132915 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832160
VERSION     DQ832160.1 GI:111053013
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132915"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03767.1"
		     /db_xref="GI:111053014"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
		     KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPD
		     IVIYQYMDDLYVGSDLEIEQHRTKVEELRQHLAGWGFTTPDKKHQKXPPFLWMGYELH
		     PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYGGIKXXQLCKLLRGAKALTEVV
		     PLTKEAELELAE"
BASE COUNT	474 a	 196 c	  254 g    283 t      5 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat 
     181 cagataccca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattgggag aaatctgttg actcagcttg gctgcacttt aaatttcccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg 
     421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagattttag agaacttaat 
     541 aaragaactc aagatttttg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccctagat 
     661 aaagaattca gaaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg 
     721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agatcctttt agaaaacaaa atccagacat agttatctat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagagcagca tagaacaaaa 
     901 gtagaggaac tgagacaaca tctggcgggg tggggattta ccacaccaga caaaaaacat 
     961 cagaaagamc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa attgggcaag ycagatttat ggggggatta aartaargca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtagtaccac taacaaaaga agcagagcta 
    1201 gaattggcag aa
//
last modified: Tue May 31 10:56 2022


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