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LOCUS DQ832160 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132915 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832160
VERSION DQ832160.1 GI:111053013
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132915"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03767.1"
/db_xref="GI:111053014"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDMNLPGRWKP
KMIGGIGGFIKVKQYDQIPIEICGHKAIGTVLIGPTPVNIIGRNLLTQLGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPD
IVIYQYMDDLYVGSDLEIEQHRTKVEELRQHLAGWGFTTPDKKHQKXPPFLWMGYELH
PDKWTVQPIVLPEKDSWTVNDIQKLVGKLNWASQIYGGIKXXQLCKLLRGAKALTEVV
PLTKEAELELAE"
BASE COUNT 474 a 196 c 254 g 283 t 5 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctt gtcacaataa agataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagacatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaaa acagtatgat
181 cagataccca tagaaatctg tggacataaa gctataggta cagtattaat aggacctaca
241 cctgtcaaca taattgggag aaatctgttg actcagcttg gctgcacttt aaatttcccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtt
361 aaacaatggc cattgacaga agaaaaaata aaagcattag tagaaatttg tacagaaatg
421 gagaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gccataaaga aaaaggacag tactaaatgg agaaaattag tagattttag agaacttaat
541 aaragaactc aagatttttg ggaagttcaa ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttttcagt tcccctagat
661 aaagaattca gaaaatatac tgcatttacc atacctagta taaacaatga gacaccaggg
721 attagatatc agtacaatgt gcttccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agatcctttt agaaaacaaa atccagacat agttatctat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagagcagca tagaacaaaa
901 gtagaggaac tgagacaaca tctggcgggg tggggattta ccacaccaga caaaaaacat
961 cagaaagamc ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctatag tgctgccaga aaaagacagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggcaag ycagatttat ggggggatta aartaargca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtagtaccac taacaaaaga agcagagcta
1201 gaattggcag aa
//
last modified: Tue May 31 10:56 2022