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LOCUS DQ832141 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132890 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832141
VERSION DQ832141.1 GI:111052975
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132890"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03748.1"
/db_xref="GI:111052976"
/translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
KMIGGIGGFIKVRQYDQIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
LVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQTINLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVRQLCKLLRGTKALTEXV
XLTKEAELELAE"
BASE COUNT 466 a 200 c 254 g 277 t 15 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa ggataggggg acaacttaar
61 gaagctctat tagatacagg agcagatgat acagtattag aagatatgga tttgccagga
121 agatggaaac caaaaatgat agggggaatt gggggtttta tcaaagtaag acagtatgat
181 caaataycca tagagatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty
361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac rccagtgttt
481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcar ttaggaatac cacatcctgc agggttaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccttagat
661 aaagaattya gaaagtatac tgcctttacc atacccagta taaacaatga gacaccmggg
721 attaggtatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agaacctttc agaaaacaaa atccagacct ggttatytat
841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa
901 atagaggaac tgagacaaca cctgttgaag tgggggttta ccacaccaga caagaarcay
961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagaccataa atctgccaga aaargacagc tggactgtca atgatataca gaagttagtg
1081 ggaaaattaa attgggcaag tcagatttac ccagggatta gagtaagaca attatgtaag
1141 ctccttaggg gaaccaaagc actaacagaa rtagtamctc taacmaaaga agcagagcta
1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022