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LOCUS	    DQ832141		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132890 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832141
VERSION     DQ832141.1 GI:111052975
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132890"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03748.1"
		     /db_xref="GI:111052976"
		     /translation="PQITLWQRPLVTIRIGGQLKEALLDTGADDTVLEDMDLPGRWKP
		     KMIGGIGGFIKVRQYDQIXIEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKEFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     LVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQTINLPEKDSWTVNDIQKLVGKLNWASQIYPGIRVRQLCKLLRGTKALTEXV
		     XLTKEAELELAE"
BASE COUNT	466 a	 200 c	  254 g    277 t     15 other
ORIGIN
       1 cctcagatca ctctttggca acgacccctc gtcacaataa ggataggggg acaacttaar 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagatatgga tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt gggggtttta tcaaagtaag acagtatgat 
     181 caaataycca tagagatctg tggacataaa gctataggta cagtattagt aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagty 
     361 aaacaatggc cattgacaga agaaaagata aaagcattag tagaaatttg tacagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaatc catacaatac rccagtgttt 
     481 gccataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttctg ggaagttcar ttaggaatac cacatcctgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttctcagt tcccttagat 
     661 aaagaattya gaaagtatac tgcctttacc atacccagta taaacaatga gacaccmggg 
     721 attaggtatc agtacaatgt gcttccacar ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agaacctttc agaaaacaaa atccagacct ggttatytat 
     841 caatacatgg atgatttgta tgtaggatct gacttagaaa tagggcagca tagaacaaaa 
     901 atagaggaac tgagacaaca cctgttgaag tgggggttta ccacaccaga caagaarcay 
     961 cagaaagaac ctccattcct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagaccataa atctgccaga aaargacagc tggactgtca atgatataca gaagttagtg 
    1081 ggaaaattaa attgggcaag tcagatttac ccagggatta gagtaagaca attatgtaag 
    1141 ctccttaggg gaaccaaagc actaacagaa rtagtamctc taacmaaaga agcagagcta 
    1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022


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