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LOCUS	    DQ832132		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132881 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832132
VERSION     DQ832132.1 GI:111052957
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132881"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03739.1"
		     /db_xref="GI:111052958"
		     /translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMXLXGRWKP
		     KMIGGIGGFIKVRQYDQXPIEICGHKTIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXEMEKEGKISKIGPENPYNTPIF
		     AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
		     IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVV
		     PLTEEAELELAE"
BASE COUNT	467 a	 196 c	  245 g    275 t     29 other
ORIGIN
       1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggrgg gcagctaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgar tttayyagga 
     121 agatggaaac caaaaatgat agggggaatt ggrggtttta tcaaagtaag acagtatgat 
     181 cagrtaccca tagaaatctg tgggcataaa actataggta cagtattaat aggacctaca 
     241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc 
     301 ataagtccta ttgaractgt accagtaaar ttaaagccag gaatggatgg tccaaaagty 
     361 aaacaatggc cattgacaga agaaaaaata aargcattaa cagaaatttg trcagaaatg 
     421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaayc catacaatac tccaatattt 
     481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttyag agaacttaat 
     541 aagaaaactc aagacttctg ggaagtycaa ttaggcatac cacatcccgc aggattaaaa 
     601 aagaaaaart cagtaacagt actggatgtr ggtgatgcrt atttttcagt tcccttagat 
     661 aaggacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacrccaggg 
     721 attagatatc agtacaatgt gctyccacag ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt rgagcctttt agaaaacaaa atccagacat agtkatctat 
     841 caatacatgg atgatttgta tgtaggctct gacttagaaa taggrcagca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgagg tggggrttta ccacaccaga caagaarcat 
     961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta 
    1021 cagcctataa agctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag ycaaatttat gcaggratta aagtraggca attatgtaaa 
    1141 ctccttaggg gaaccaaagc actaacagaa gtagtmccac taacagaaga agcagagcta 
    1201 gaactrgcag aa
//
last modified: Tue May 31 10:56 2022


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