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LOCUS DQ832132 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132881 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832132
VERSION DQ832132.1 GI:111052957
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132881"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03739.1"
/db_xref="GI:111052958"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEEMXLXGRWKP
KMIGGIGGFIKVRQYDQXPIEICGHKTIGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALTEICXEMEKEGKISKIGPENPYNTPIF
AIKKKDSTKWRKLVDFRELNKKTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILEPFRKQNPD
IVIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLRWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIKLPEKDSWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVV
PLTEEAELELAE"
BASE COUNT 467 a 196 c 245 g 275 t 29 other
ORIGIN
1 cctcaaatca ctctttggca acgacccctc gtcacaataa agataggrgg gcagctaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgar tttayyagga
121 agatggaaac caaaaatgat agggggaatt ggrggtttta tcaaagtaag acagtatgat
181 cagrtaccca tagaaatctg tgggcataaa actataggta cagtattaat aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 ataagtccta ttgaractgt accagtaaar ttaaagccag gaatggatgg tccaaaagty
361 aaacaatggc cattgacaga agaaaaaata aargcattaa cagaaatttg trcagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgaaaayc catacaatac tccaatattt
481 gctataaaga aaaaagacag tactaaatgg agaaaattag tagatttyag agaacttaat
541 aagaaaactc aagacttctg ggaagtycaa ttaggcatac cacatcccgc aggattaaaa
601 aagaaaaart cagtaacagt actggatgtr ggtgatgcrt atttttcagt tcccttagat
661 aaggacttca ggaagtatac tgcatttacc atacctagta taaacaatga gacrccaggg
721 attagatatc agtacaatgt gctyccacag ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt rgagcctttt agaaaacaaa atccagacat agtkatctat
841 caatacatgg atgatttgta tgtaggctct gacttagaaa taggrcagca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgagg tggggrttta ccacaccaga caagaarcat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagcctataa agctgccaga aaaagacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag ycaaatttat gcaggratta aagtraggca attatgtaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtagtmccac taacagaaga agcagagcta
1201 gaactrgcag aa
//
last modified: Tue May 31 10:56 2022