HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ832131		    1212 bp    DNA     linear	VRL 08-NOV-2006
DEFINITION  HIV-1 isolate 05-132880 from USA pol protein (pol) gene, partial
	    cds
ACCESSION   DQ832131
VERSION     DQ832131.1 GI:111052955
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 1212)
            Show all sequences for reference 1
  AUTHORS   Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
	    Liu,N. and Wilson,C.M.
  CONSRTM   Adolescent Medicine Trials Network for HIV/AIDS Interventions
  TITLE     Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
	    Adolescents: A Multicenter Adolescent Medicine Trials Network for
	    HIV/AIDS Interventions Study
  JOURNAL   J. Infect. Dis. 194 (11), 1505-1509 (2006)
  PUBMED    17083034
REFERENCE   2 (bases 1 to 1212)
            Show all sequences for reference 2
  AUTHORS   Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
	    Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
	    Liu,N.
  CONSRTM   Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
  TITLE     Direct Submission
  JOURNAL   Submitted (29-JUN-2006) Pediatrics and Medicine, University of
	    Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
	    35294, USA
FEATURES             Location/Qualifiers
     source	     1..1212
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05-132880"
		     /isolation_source="patient with recently acquired HIV
		     infection (<180 days)"
		     /db_xref="taxon:11676"
		     /country="USA"
     gene	     <1..>1212
		     /gene="pol"
     CDS	     <1..>1212
		     /gene="pol"
		     /note="RT-PR"
		     /codon_start="1"
		     /transl_table="1"
		     /product="pol protein"
		     /protein_id="ABH03738.1"
		     /db_xref="GI:111052956"
		     /translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
		     KMIGGIGGFIKVRQYDQXAXEICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
		     PIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
		     AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
		     LHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPE
		     LEIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELH
		     PDKWTVQPIVLPXKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEVI
		     PLTEEAELELAE"
BASE COUNT	467 a	 198 c	  258 g    280 t      9 other
ORIGIN
       1 cctcaaatca ctctttggca gcgacccctc gtcacagtaa agataggggg gcaattaaag 
      61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga 
     121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat 
     181 cagrtagcca trgaaatttg tggacataag gctgtaggta cagtgttaat aggacctaca 
     241 cctgtcaaca taattggaag aaacctgttg actcagattg gytgcacttt aaattttccc 
     301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtt 
     361 aaacaatggc cattgacaga agaaaaaata aaggcattaa tagaaatttg tacagaaatg 
     421 gaaaaggarg graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt 
     481 gcyataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat 
     541 aagagaactc aagacttttg ggaagttcaa ttagggatac cacatcccgc agggttaaaa 
     601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttacat 
     661 gaagacttta ggaagtatac tgcatttacc atacctagta taaacaatga gacaccagga 
     721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa 
     781 agtagcatga caaaaatctt agatcctttc agaaaacaaa atccagaatt agaaatctat 
     841 caatatatgg atgatttgta tgtagggtcy gacttagaaa tagggcaaca tagaacaaaa 
     901 atagaggaac tgagacaaca tctgttgaag tgggggctta ctacaccaga caagaaacat 
     961 cagaaagaac ctccattcct ttggatgggt tatgagctcc atcctgataa atggacagtg 
    1021 cagcccatag tactgccarm aaaggacagc tggactgtca atgacataca gaagttagtg 
    1081 ggaaaattga attgggcaag tcagatttac ccagggatta aagtaaagca attatgtaaa 
    1141 ctccttaggg gagccaaagc actaacagaa gtaatacccc taacagaaga agcagagcta 
    1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health