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LOCUS DQ832131 1212 bp DNA linear VRL 08-NOV-2006
DEFINITION HIV-1 isolate 05-132880 from USA pol protein (pol) gene, partial
cds
ACCESSION DQ832131
VERSION DQ832131.1 GI:111052955
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Viani,R.M., Peralta,L., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P.,
Liu,N. and Wilson,C.M.
CONSRTM Adolescent Medicine Trials Network for HIV/AIDS Interventions
TITLE Prevalence of Primary HIV-1 Drug Resistance among Recently Infected
Adolescents: A Multicenter Adolescent Medicine Trials Network for
HIV/AIDS Interventions Study
JOURNAL J. Infect. Dis. 194 (11), 1505-1509 (2006)
PUBMED 17083034
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Wilson,C.M., Viani,R.M., Aldrovandi,G., Kapogiannis,B.G.,
Mitchell,R., Spector,S.A., Lie,Y.S., Weidler,J.M., Bates,M.P. and
Liu,N.
CONSRTM Adolescent Medicine Network for HIV/AIDS Interventions (ATN)
TITLE Direct Submission
JOURNAL Submitted (29-JUN-2006) Pediatrics and Medicine, University of
Alabama at Birmingham, 845 19th South BBRB 220A, Birmingahm, AL
35294, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05-132880"
/isolation_source="patient with recently acquired HIV
infection (<180 days)"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="RT-PR"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABH03738.1"
/db_xref="GI:111052956"
/translation="PQITLWQRPLVTVKIGGQLKEALLDTGADDTVLEEMNLPGRWKP
KMIGGIGGFIKVRQYDQXAXEICGHKAVGTVLIGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPRVKQWPLTEEKIKALIEICTEMEKEGKISKIGPENPYNTPVF
AIKKKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LHEDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQSSMTKILDPFRKQNPE
LEIYQYMDDLYVGSDLEIGQHRTKIEELRQHLLKWGLTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIVLPXKDSWTVNDIQKLVGKLNWASQIYPGIKVKQLCKLLRGAKALTEVI
PLTEEAELELAE"
BASE COUNT 467 a 198 c 258 g 280 t 9 other
ORIGIN
1 cctcaaatca ctctttggca gcgacccctc gtcacagtaa agataggggg gcaattaaag
61 gaagctctat tagatacagg agcagatgat acagtattag aagaaatgaa tttgccagga
121 agatggaaac caaaaatgat agggggaatt ggaggtttta tcaaagtaag acagtatgat
181 cagrtagcca trgaaatttg tggacataag gctgtaggta cagtgttaat aggacctaca
241 cctgtcaaca taattggaag aaacctgttg actcagattg gytgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaagagtt
361 aaacaatggc cattgacaga agaaaaaata aaggcattaa tagaaatttg tacagaaatg
421 gaaaaggarg graaaatttc aaaaattggg cctgaaaatc catacaatac tccagtattt
481 gcyataaaga aaaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttttg ggaagttcaa ttagggatac cacatcccgc agggttaaaa
601 aagaaaaaat cagtaacagt actagatgtg ggtgatgcat atttttcagt tcccttacat
661 gaagacttta ggaagtatac tgcatttacc atacctagta taaacaatga gacaccagga
721 attagatatc agtacaatgt gcttccacaa ggatggaaag gatcaccagc aatattccaa
781 agtagcatga caaaaatctt agatcctttc agaaaacaaa atccagaatt agaaatctat
841 caatatatgg atgatttgta tgtagggtcy gacttagaaa tagggcaaca tagaacaaaa
901 atagaggaac tgagacaaca tctgttgaag tgggggctta ctacaccaga caagaaacat
961 cagaaagaac ctccattcct ttggatgggt tatgagctcc atcctgataa atggacagtg
1021 cagcccatag tactgccarm aaaggacagc tggactgtca atgacataca gaagttagtg
1081 ggaaaattga attgggcaag tcagatttac ccagggatta aagtaaagca attatgtaaa
1141 ctccttaggg gagccaaagc actaacagaa gtaatacccc taacagaaga agcagagcta
1201 gaactggcag aa
//
last modified: Tue May 31 10:56 2022