HIV Databases HIV Databases home HIV Databases home
HIV Sequence Database



Download: ENTIRE SEQUENCE SEQUENCE FRAGMENT start end
Format:  
View NCBI entry		Download GenBank file		Graphics View		Download GFF3 File

LOCUS	    DQ659999		     520 bp    RNA     linear	VRL 17-JUN-2008
DEFINITION  HIV-1 isolate 04MZD2045 from Mozambique protease (pol) gene,
	    partial cds
ACCESSION   DQ659999
VERSION     DQ659999.1 GI:109727389
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 520)
            Show all sequences for reference 1
  AUTHORS   Bartolo,I., Casanovas,J., Rocha,C., Mondlane,J., Folgosa,E.,
	    Bastos,R., Manuel,R. and Taveira,N.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-MAY-2006) Microbiologia, Faculdade de Farmacia de
	    Lisboa, Centro de Patogenese Molecular, Unidade dos Retrovirus e
	    Infeccoes Associadas, Avenida das Forcas Armadas, Lisboa 1649-019,
	    Portugal
REFERENCE   2
            Show all sequences for reference 2
  AUTHORS   Bartolo,I., Casanovas,J., Bastos,R., Rocha,C., Abecasis,A.B.,
	    Folgosa,E., Mondlane,J., Manuel,R. and Taveira,N.
  TITLE     HIV-1 genetic diversity and transmitted drug resistance in health
	    care settings in Maputo, Mozambique.
  JOURNAL   J. Acquir. Immune Defic. Syndr.. 51(3); 323-31 (2009)
  PUBMED    19582896
FEATURES             Location/Qualifiers
     source	     1..520
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolate="04MZD2045"
		     /db_xref="taxon:11676"
		     /country="Mozambique"
     gene	     <1..>520
		     /gene="pol"
     CDS	     <1..>520
		     /gene="pol"
		     /codon_start="3"
		     /transl_table="1"
		     /product="protease"
		     /protein_id="ABG45980.1"
		     /db_xref="GI:109727390"
		     /translation="EQTRANSPTRANSPTGREFQVRGDNPRSEAGAERQGTFNFPQIT
		     LWQRPLVSIKVGGQIKEALLDTGADDTVLEEIDLPGKWKPKMIGGIGGFIKVRQYEQI
		     PIEICGKKAIGTVLVGPTPVNIIGKNLLTQLGCTLNFPISPIETVPVKLKPGMDGPRV
		     KQWPLTEEKIKA"
BASE COUNT	196 a	 108 c	  115 g    101 t
ORIGIN
       1 cagagcagac cagagccaac agccccacca gagccaacag ccccaccggc agagagtttc 
      61 aggttcgagg agacaacccc cgctccgaag caggagcaga aagacaggga acctttaact 
     121 tccctcaaat cactctttgg cagcgacccc ttgtctcaat aaaagtaggg ggccaaataa 
     181 aagaggctct cctagataca ggagcagatg atacagtatt agaagaaata gatttgccag 
     241 gaaaatggaa accaaaaatg ataggaggaa ttggaggttt tatcaaagta agacagtatg 
     301 aacaaatacc catagaaatt tgtgggaaaa aagctatagg tacagtatta gtaggaccta 
     361 cacctgtcaa cataattgga aaaaatctgt tgacacagct tggatgcaca ctaaattttc 
     421 caattagtcc cattgaaact gtaccagtaa aattgaagcc aggaatggat ggcccaaggg 
     481 ttaaacaatg gccattgaca gaagaaaaaa taaaagcatt 
//
last modified: Tue May 31 10:56 2022


Questions or comments? Contact us at seq-info@lanl.gov.

 
Operated by Triad National Security, LLC for the U.S. Department of Energy's National Nuclear Security Administration
© Copyright Triad National Security, LLC. All Rights Reserved | Disclaimer/Privacy

Dept of Health & Human Services Los Alamos National Institutes of Health