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LOCUS	    DQ391361		     546 bp    DNA     linear	VRL 16-JUN-2006
DEFINITION  HIV-1 isolate 099v00Rc19 from USA nonfunctional reverse
	    transcriptase (pol) gene, partial sequence
ACCESSION   DQ391361
VERSION     DQ391361.1 GI:88768099
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 546)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
	    Siliciano,R.F.
  TITLE     Residual Human Immunodeficiency Virus Type 1 Viremia in Some
	    Patients on Antiretroviral Therapy Is Dominated by a Small Number
	    of Invariant Clones Rarely Found in Circulating CD4+ T Cells
  JOURNAL   J. Virol. 80 (13), 6441-6457 (2006)
  PUBMED    16775332
REFERENCE   2 (bases 1 to 546)
            Show all sequences for reference 2
  AUTHORS   Siliciano,R.F.
  TITLE     Direct Submission
  JOURNAL   Submitted (07-FEB-2006) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
FEATURES             Location/Qualifiers
     source	     1..546
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="099v00Rc19"
		     /isolation_source="subject 099 resting CD4 cells, time
		     point 00"
		     /db_xref="taxon:11676"
		     /clone="19"
		     /country="USA"
     gene	     <1..>546
		     /gene="pol"
     misc_feature    <1..>546
		     /gene="pol"
		     /note="nonfunctional reverse transcriptase due to
		     mutation"
BASE COUNT	224 a	  85 c	  108 g    129 t
ORIGIN
       1 tgtacagaaa tggaaaaaga agggaaaatt tcaaaaatta ggcctgaaaa tccatacaat 
      61 actccagtat ttgtcataaa gaaaaaggac agtactaaat ggagaaaatt agtagatttc 
     121 agagaactca ataagagaac tcaagacttc taggaagttc aattaggaat accacatcct 
     181 gcagggttaa aaaagaataa atcagtaaca gtactggatg tgggtgatgc atatttctca 
     241 gttcccttag ataaagactt caggaagtat actgcattta ctatacctag tacaaataat 
     301 gagacaccag ggattagata tcagtacaat gtgctgccac agggatagaa aggatcgcca 
     361 gcaatattcc aatgtagcat gacaaaaatc ttagagcctt ttagaaaaca aaatccagac 
     421 atagttatct atcaatacat ggatgattta tatgtaggat cagacttaga aatagggcag 
     481 catagggaaa aaatagagga actgagacaa catctgatga agtgaggatt taccacacca 
     541 gacaaa
//
last modified: Tue May 31 10:56 2022


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