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LOCUS DQ391361 546 bp DNA linear VRL 16-JUN-2006
DEFINITION HIV-1 isolate 099v00Rc19 from USA nonfunctional reverse
transcriptase (pol) gene, partial sequence
ACCESSION DQ391361
VERSION DQ391361.1 GI:88768099
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 546)
Show all sequences for reference 1
AUTHORS Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
Siliciano,R.F.
TITLE Residual Human Immunodeficiency Virus Type 1 Viremia in Some
Patients on Antiretroviral Therapy Is Dominated by a Small Number
of Invariant Clones Rarely Found in Circulating CD4+ T Cells
JOURNAL J. Virol. 80 (13), 6441-6457 (2006)
PUBMED 16775332
REFERENCE 2 (bases 1 to 546)
Show all sequences for reference 2
AUTHORS Siliciano,R.F.
TITLE Direct Submission
JOURNAL Submitted (07-FEB-2006) Medicine, Johns Hopkins University School
of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
FEATURES Location/Qualifiers
source 1..546
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="099v00Rc19"
/isolation_source="subject 099 resting CD4 cells, time
point 00"
/db_xref="taxon:11676"
/clone="19"
/country="USA"
gene <1..>546
/gene="pol"
misc_feature <1..>546
/gene="pol"
/note="nonfunctional reverse transcriptase due to
mutation"
BASE COUNT 224 a 85 c 108 g 129 t
ORIGIN
1 tgtacagaaa tggaaaaaga agggaaaatt tcaaaaatta ggcctgaaaa tccatacaat
61 actccagtat ttgtcataaa gaaaaaggac agtactaaat ggagaaaatt agtagatttc
121 agagaactca ataagagaac tcaagacttc taggaagttc aattaggaat accacatcct
181 gcagggttaa aaaagaataa atcagtaaca gtactggatg tgggtgatgc atatttctca
241 gttcccttag ataaagactt caggaagtat actgcattta ctatacctag tacaaataat
301 gagacaccag ggattagata tcagtacaat gtgctgccac agggatagaa aggatcgcca
361 gcaatattcc aatgtagcat gacaaaaatc ttagagcctt ttagaaaaca aaatccagac
421 atagttatct atcaatacat ggatgattta tatgtaggat cagacttaga aatagggcag
481 catagggaaa aaatagagga actgagacaa catctgatga agtgaggatt taccacacca
541 gacaaa
//
last modified: Tue May 31 10:56 2022