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LOCUS	    DQ391337		     373 bp    RNA     linear	VRL 16-JUN-2006
DEFINITION  HIV-1 clone fe4.2 from USA envelope glycoprotein (env) gene,
	    partial cds
ACCESSION   DQ391337
VERSION     DQ391337.1 GI:90191804
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 373)
            Show all sequences for reference 1
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Lee,P.K.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Lee,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D., Nettles,R.E. and
	    Siliciano,R.F.
  TITLE     Residual Human Immunodeficiency Virus Type 1 Viremia in Some
	    Patients on Antiretroviral Therapy Is Dominated by a Small Number
	    of Invariant Clones Rarely Found in Circulating CD4+ T Cells
  JOURNAL   J. Virol. 80 (13), 6441-6457 (2006)
  PUBMED    16775332
REFERENCE   2 (bases 1 to 373)
            Show all sequences for reference 2
  AUTHORS   Bailey,J.R., Sedaghat,A.R., Kieffer,T., Brennan,T., Kwon,P.,
	    Wind-Rotolo,M., Haggerty,C.M., Kamireddi,A.R., Liu,Y., Li,J.,
	    Persaud,D., Gallant,J.E., Cofrancesco,J. Jr.., Quinn,T.C.,
	    Wilke,C.O., Ray,S.C., Siliciano,J.D. and Nettles,R.E.
  TITLE     Direct Submission
  JOURNAL   Submitted (06-FEB-2006) Medicine, Johns Hopkins University School
	    of Medicine, 733 N Broadway, Baltimore, MD 21205, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Wang,Z., Gurule,E.E., Brennan,T.P., Gerold,J.M., Kwon,K.J.,
	    Hosmane,N.N., Kumar,M.R., Beg,S.A., Capoferri,A.A., Ray,S.C.,
	    Ho,Y.-C., Hill,A.L., Siliciano,J.D. and Siliciano,R.F.
  TITLE     Expanded cellular clones carrying replication-competent HIV-1
	    persist, wax, and wane.
  JOURNAL   Proc. Natl. Acad. Sci. U. S. A.. 115(11); E2575-E2584 (2018)
  PUBMED    29483265
FEATURES             Location/Qualifiers
     source	     1..373
		     /organism="Human immunodeficiency virus 1"
		     /mol_type="genomic RNA"
		     /isolation_source="subject 154 plasma, time point 38"
		     /db_xref="taxon:11676"
		     /clone="fe4.2"
		     /country="USA"
     gene	     <1..>373
		     /gene="env"
     CDS	     <1..>373
		     /gene="env"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABD91631.1"
		     /db_xref="GI:90191805"
		     /translation="LNETVIINCTRPNNHTRKRMTMGPGRVYYTTGEIIGDIRKAHCN
		     LTRANWTETLKRIAIKLGEQFNKTFNQSSGGDPEIAMISFNCGGEFFYCNSSQLFNST
		     ITLPCRIKQIINMWQGVGKAMY"
BASE COUNT	156 a	  55 c	   72 g     90 t
ORIGIN
       1 ctgaatgaaa ctgtaatcat aaattgtaca agacccaaca accatacaag aaaaaggatg 
      61 actatgggac caggcagagt atattataca acaggagaaa taataggaga tataagaaaa 
     121 gcacattgta acctgactag agcaaattgg actgagactt taaaaaggat agctataaaa 
     181 ttaggagaac aatttaataa aacatttaac caatcctcag gaggggaccc agaaattgca 
     241 atgatcagtt ttaattgtgg aggggaattt ttctattgta attcatcaca actgtttaat 
     301 agtactatca cactcccatg cagaataaaa caaattataa acatgtggca gggagtagga 
     361 aaagcaatgt atg
//
last modified: Tue May 31 10:56 2022


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