View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS DQ382372 2613 bp DNA linear VRL 29-MAY-2008
DEFINITION HIV-1 isolate 05ZAFV14 from South Africa envelope glycoprotein
(env) gene, complete cds
ACCESSION DQ382372
VERSION DQ382372.1 GI:89113216
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 2613)
Show all sequences for reference 1
AUTHORS Michler,K., Connell,B.J., Venter,W.D.F., Stevens,W.S., Capovilla,A.
and Papathanasopoulos,M.A.
TITLE Genotypic characterization and comparison of full-length envelope
glycoproteins from South African HIV type 1 subtype C primary
isolates that utilize CCR5 and/or CXCR4.
JOURNAL AIDS Res. Hum. Retroviruses. 24(5); 743-51 (2008)
PUBMED 18507530
REFERENCE 2 (bases 1 to 2613)
Show all sequences for reference 2
AUTHORS Connell,B.J., Michler,K.L., Capovilla,A., Venter,F., Stevens,W.S.
and Papathanasopoulos,M.A.
TITLE Direct Submission
JOURNAL Submitted (30-JAN-2006) Molecular Medicine and Haematology,
University of the Witwatersrand, Medical School, 7 York Road,
Parktown, Johannesburg, Gauteng 2193, South Africa
REFERENCE 3
Show all sequences for reference 3
AUTHORS Connell,B.J., Michler,K., Capovilla,A., Venter,W.D.F., Stevens,W.S.
and Papathanasopoulos,M.A.
TITLE Emergence of X4 usage among HIV-1 subtype C: evidence for an
evolving epidemic in South Africa.
JOURNAL AIDS. 22(7); 896-9 (2008)
PUBMED 18427209
FEATURES Location/Qualifiers
source 1..2613
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="05ZAFV14"
/db_xref="taxon:11676"
/country="South Africa"
/note="CXCR4-utilizing subtype: C"
gene 1..2613
/gene="env"
CDS 1..2613
/gene="env"
/note="gp160"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD61240.1"
/db_xref="GI:89113217"
/translation="MRVRGTQRNYQQWWIWGILGFWMLIMCNGKEKMWVTVYYGVPVW
REAKATLFCASDAKAYEKEVHNVWATHACVPTDPNPQELVLINVTENFNMWKNDMVEQ
MHEDIISLWDESLKPCVKLTPICVTLNCSNVTLSKSNDTYTTAKMNPLNITNEMKNCS
FNVTAEIRNKKRTEYALFYRLDIVSLNGESNETSNEYRLINCNSSTVTQACPKVNFDP
IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVGSTQLLLNGSLAEKDI
IIRSENLTNNAKIIIVHLNESVQINCTRPANTRIKRLGIGPGQAFRTVKQIIGDIRQS
HCNISAWQWNRTLQRVSEKLKKHFPNKTFIKFQPPSGGDLEITTHSFNCGGEFFYCNT
SNLFNRTYNSTDKSDRFNSTDNSTITIQCRIRQFINMWQRVGRAMYAPPIEGNITCKS
KITGLLLTRDGGEGNKNDTNDTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGLAPTKA
KRRVVEREKRAVGIGALFLGVLGVAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAI
EAQQHMLQLTVWGIKQLQARVLAIERYLQDQRLLGIWGCSGKLICTTNVPWNSSWSNR
TYDDIWNNTTWMQWDREINNYSNIIHWLLEDSQIQQEKNEQELLALDKWNNLWSWFDI
TNWLWYIRIFIMIVGGLIGLRIIVAVLSIVNRVRQGYSPLSFQTLNPSPREPDRLGRI
EEEGGEQDRNKSIRLVSGFLALAWDDLRSLCLFCYHRLRDFILIAVRAVELLGRSSLR
GLQRGWEALKELGNLVQYWGLELKKSAISLFDSFAITVAEGTDRIIELVRGICRAIYH
IPRRIRQGFETALL"
BASE COUNT 936 a 435 c 602 g 640 t
ORIGIN
1 atgagagtga gggggacaca gaggaattat caacaatggt ggatatgggg catcttaggc
61 ttttggatgc taattatgtg taatgggaag gagaaaatgt gggtcacagt ttattatggg
121 gtacctgtgt ggagagaagc aaaagctact ctattctgtg catcagatgc taaagcatat
181 gagaaagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca
241 caagaattgg ttttgataaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggtg
301 gagcagatgc atgaggatat aattagttta tgggatgaaa gcctaaagcc ttgtgtaaag
361 ttgaccccaa tctgtgtcac tttaaactgt agtaatgtta ccctcagtaa aagtaatgat
421 acctatacta ccgcaaaaat gaaccccctc aatataacca acgaaatgaa aaattgctct
481 ttcaatgtaa ctgcagaaat aagaaataag aaaagaacag aatatgcgct tttttataga
541 cttgatatag tatcacttaa tggggaatcc aatgagacat ccaatgagta tagattaata
601 aattgtaatt cctcaactgt aacacaagcc tgtccaaagg tcaattttga tccaattcct
661 atacattatt gtgctcctgc tggttatgcg attctaaagt gtaataataa gacattcaat
721 ggaacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taaaccagtg
781 ggatcaactc aactactgtt aaatggtagc ctagcagaaa aggacataat aattagatct
841 gaaaatctga caaacaatgc caaaataata atagtacatc ttaatgaatc tgtacaaatt
901 aattgtacaa gaccagcaaa tactagaata aaaagattgg ggataggacc aggacaagca
961 ttccgtacag ttaaacaaat aataggagat ataagacagt cacattgtaa cattagtgca
1021 tggcagtgga atagaacttt acaaagggta agtgaaaaat taaagaaaca tttccctaat
1081 aaaacattca taaaatttca accaccctca ggaggggatc tagaaattac aacacatagc
1141 tttaattgtg gaggagaatt tttctattgc aacacatcaa acctgtttaa taggacatac
1201 aatagtacag ataagtcaga taggtttaat agtacagata attcaaccat cacaatccaa
1261 tgcagaataa gacaatttat aaacatgtgg cagagggtag gacgagcaat gtatgcccct
1321 cccattgaag gaaacataac atgtaaatca aaaatcacag gactactatt gacacgtgat
1381 ggaggcgagg ggaataagaa tgacacaaat gacacagaga tattcagacc tggaggagga
1441 gatatgaggg acaattggag aagtgaatta tataaatata aagtggtaga aattaagcca
1501 ttaggactag cacccactaa agcaaaaagg agagtggtgg agagagaaaa aagagcagtg
1561 ggaataggag cgttgttcct tggggtcttg ggagtagcag gaagcactat gggcgcagca
1621 tcaataacgt tgacggtaca ggccagacaa ttgttgtctg gtatagtgca acagcaaaac
1681 aatttgctga gggctataga ggcgcaacag catatgttgc aactcacggt ctggggcatt
1741 aaacagctcc aggcaagagt cctggctata gaaagatacc tacaggatca acggctccta
1801 gggatttggg gctgctctgg aaagctcatc tgcaccacta atgtgccttg gaactctagt
1861 tggagtaata gaacttatga tgatatttgg aataacacga cctggatgca gtgggataga
1921 gaaattaata attactcaaa cataatacac tggctacttg aagactcgca aatccagcag
1981 gagaaaaatg aacaagaatt actggctttg gacaagtgga acaatctgtg gagttggttt
2041 gacataacaa actggctgtg gtatataaga atattcataa tgatagtagg aggcttaata
2101 gggttaagaa taattgttgc tgtgctttct atagtgaata gagttaggca gggatactca
2161 cctttgtcat ttcagaccct caacccaagc ccgagggaac ccgacaggct cggaagaatc
2221 gaagaagaag gtggagagca agacagaaac aaatcaattc gattagtgag cggattctta
2281 gcacttgcct gggacgacct gcggagcctg tgccttttct gctaccaccg attgagagac
2341 ttcatattga ttgcagtgag agcagtggaa cttctgggac gcagcagtct caggggacta
2401 cagagggggt gggaagccct taaagaattg ggaaaccttg tgcagtattg gggtctagag
2461 ctaaaaaaga gtgctatcag tctatttgac agctttgcaa taacagtagc tgaaggaaca
2521 gatagaatta tagaattggt aagaggaatt tgtagggcta tctaccatat acctagaaga
2581 ataagacagg gctttgaaac agctttgcta taa
//
last modified: Tue May 31 10:56 2022