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LOCUS	    DQ382372		    2613 bp    DNA     linear	VRL 29-MAY-2008
DEFINITION  HIV-1 isolate 05ZAFV14 from South Africa envelope glycoprotein
	    (env) gene, complete cds
ACCESSION   DQ382372
VERSION     DQ382372.1 GI:89113216
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 2613)
            Show all sequences for reference 1
  AUTHORS   Michler,K., Connell,B.J., Venter,W.D.F., Stevens,W.S., Capovilla,A.
	    and Papathanasopoulos,M.A.
  TITLE     Genotypic characterization and comparison of full-length envelope
	    glycoproteins from South African HIV type 1 subtype C primary
	    isolates that utilize CCR5 and/or CXCR4.
  JOURNAL   AIDS Res. Hum. Retroviruses. 24(5); 743-51 (2008)
  PUBMED    18507530
REFERENCE   2 (bases 1 to 2613)
            Show all sequences for reference 2
  AUTHORS   Connell,B.J., Michler,K.L., Capovilla,A., Venter,F., Stevens,W.S.
	    and Papathanasopoulos,M.A.
  TITLE     Direct Submission
  JOURNAL   Submitted (30-JAN-2006) Molecular Medicine and Haematology,
	    University of the Witwatersrand, Medical School, 7 York Road,
	    Parktown, Johannesburg, Gauteng 2193, South Africa
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Connell,B.J., Michler,K., Capovilla,A., Venter,W.D.F., Stevens,W.S.
	    and Papathanasopoulos,M.A.
  TITLE     Emergence of X4 usage among HIV-1 subtype C: evidence for an
	    evolving epidemic in South Africa.
  JOURNAL   AIDS. 22(7); 896-9 (2008)
  PUBMED    18427209
FEATURES             Location/Qualifiers
     source	     1..2613
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="05ZAFV14"
		     /db_xref="taxon:11676"
		     /country="South Africa"
		     /note="CXCR4-utilizing subtype: C"
     gene	     1..2613
		     /gene="env"
     CDS	     1..2613
		     /gene="env"
		     /note="gp160"
		     /codon_start="1"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="ABD61240.1"
		     /db_xref="GI:89113217"
		     /translation="MRVRGTQRNYQQWWIWGILGFWMLIMCNGKEKMWVTVYYGVPVW
		     REAKATLFCASDAKAYEKEVHNVWATHACVPTDPNPQELVLINVTENFNMWKNDMVEQ
		     MHEDIISLWDESLKPCVKLTPICVTLNCSNVTLSKSNDTYTTAKMNPLNITNEMKNCS
		     FNVTAEIRNKKRTEYALFYRLDIVSLNGESNETSNEYRLINCNSSTVTQACPKVNFDP
		     IPIHYCAPAGYAILKCNNKTFNGTGPCNNVSTVQCTHGIKPVGSTQLLLNGSLAEKDI
		     IIRSENLTNNAKIIIVHLNESVQINCTRPANTRIKRLGIGPGQAFRTVKQIIGDIRQS
		     HCNISAWQWNRTLQRVSEKLKKHFPNKTFIKFQPPSGGDLEITTHSFNCGGEFFYCNT
		     SNLFNRTYNSTDKSDRFNSTDNSTITIQCRIRQFINMWQRVGRAMYAPPIEGNITCKS
		     KITGLLLTRDGGEGNKNDTNDTEIFRPGGGDMRDNWRSELYKYKVVEIKPLGLAPTKA
		     KRRVVEREKRAVGIGALFLGVLGVAGSTMGAASITLTVQARQLLSGIVQQQNNLLRAI
		     EAQQHMLQLTVWGIKQLQARVLAIERYLQDQRLLGIWGCSGKLICTTNVPWNSSWSNR
		     TYDDIWNNTTWMQWDREINNYSNIIHWLLEDSQIQQEKNEQELLALDKWNNLWSWFDI
		     TNWLWYIRIFIMIVGGLIGLRIIVAVLSIVNRVRQGYSPLSFQTLNPSPREPDRLGRI
		     EEEGGEQDRNKSIRLVSGFLALAWDDLRSLCLFCYHRLRDFILIAVRAVELLGRSSLR
		     GLQRGWEALKELGNLVQYWGLELKKSAISLFDSFAITVAEGTDRIIELVRGICRAIYH
		     IPRRIRQGFETALL"
BASE COUNT	936 a	 435 c	  602 g    640 t
ORIGIN
       1 atgagagtga gggggacaca gaggaattat caacaatggt ggatatgggg catcttaggc 
      61 ttttggatgc taattatgtg taatgggaag gagaaaatgt gggtcacagt ttattatggg 
     121 gtacctgtgt ggagagaagc aaaagctact ctattctgtg catcagatgc taaagcatat 
     181 gagaaagaag tgcataatgt ctgggctaca catgcctgtg tacccacaga ccccaaccca 
     241 caagaattgg ttttgataaa tgtaacagaa aactttaaca tgtggaaaaa tgacatggtg 
     301 gagcagatgc atgaggatat aattagttta tgggatgaaa gcctaaagcc ttgtgtaaag 
     361 ttgaccccaa tctgtgtcac tttaaactgt agtaatgtta ccctcagtaa aagtaatgat 
     421 acctatacta ccgcaaaaat gaaccccctc aatataacca acgaaatgaa aaattgctct 
     481 ttcaatgtaa ctgcagaaat aagaaataag aaaagaacag aatatgcgct tttttataga 
     541 cttgatatag tatcacttaa tggggaatcc aatgagacat ccaatgagta tagattaata 
     601 aattgtaatt cctcaactgt aacacaagcc tgtccaaagg tcaattttga tccaattcct 
     661 atacattatt gtgctcctgc tggttatgcg attctaaagt gtaataataa gacattcaat 
     721 ggaacaggac catgcaataa tgtcagcaca gtacaatgta cacatggaat taaaccagtg 
     781 ggatcaactc aactactgtt aaatggtagc ctagcagaaa aggacataat aattagatct 
     841 gaaaatctga caaacaatgc caaaataata atagtacatc ttaatgaatc tgtacaaatt 
     901 aattgtacaa gaccagcaaa tactagaata aaaagattgg ggataggacc aggacaagca 
     961 ttccgtacag ttaaacaaat aataggagat ataagacagt cacattgtaa cattagtgca 
    1021 tggcagtgga atagaacttt acaaagggta agtgaaaaat taaagaaaca tttccctaat 
    1081 aaaacattca taaaatttca accaccctca ggaggggatc tagaaattac aacacatagc 
    1141 tttaattgtg gaggagaatt tttctattgc aacacatcaa acctgtttaa taggacatac 
    1201 aatagtacag ataagtcaga taggtttaat agtacagata attcaaccat cacaatccaa 
    1261 tgcagaataa gacaatttat aaacatgtgg cagagggtag gacgagcaat gtatgcccct 
    1321 cccattgaag gaaacataac atgtaaatca aaaatcacag gactactatt gacacgtgat 
    1381 ggaggcgagg ggaataagaa tgacacaaat gacacagaga tattcagacc tggaggagga 
    1441 gatatgaggg acaattggag aagtgaatta tataaatata aagtggtaga aattaagcca 
    1501 ttaggactag cacccactaa agcaaaaagg agagtggtgg agagagaaaa aagagcagtg 
    1561 ggaataggag cgttgttcct tggggtcttg ggagtagcag gaagcactat gggcgcagca 
    1621 tcaataacgt tgacggtaca ggccagacaa ttgttgtctg gtatagtgca acagcaaaac 
    1681 aatttgctga gggctataga ggcgcaacag catatgttgc aactcacggt ctggggcatt 
    1741 aaacagctcc aggcaagagt cctggctata gaaagatacc tacaggatca acggctccta 
    1801 gggatttggg gctgctctgg aaagctcatc tgcaccacta atgtgccttg gaactctagt 
    1861 tggagtaata gaacttatga tgatatttgg aataacacga cctggatgca gtgggataga 
    1921 gaaattaata attactcaaa cataatacac tggctacttg aagactcgca aatccagcag 
    1981 gagaaaaatg aacaagaatt actggctttg gacaagtgga acaatctgtg gagttggttt 
    2041 gacataacaa actggctgtg gtatataaga atattcataa tgatagtagg aggcttaata 
    2101 gggttaagaa taattgttgc tgtgctttct atagtgaata gagttaggca gggatactca 
    2161 cctttgtcat ttcagaccct caacccaagc ccgagggaac ccgacaggct cggaagaatc 
    2221 gaagaagaag gtggagagca agacagaaac aaatcaattc gattagtgag cggattctta 
    2281 gcacttgcct gggacgacct gcggagcctg tgccttttct gctaccaccg attgagagac 
    2341 ttcatattga ttgcagtgag agcagtggaa cttctgggac gcagcagtct caggggacta 
    2401 cagagggggt gggaagccct taaagaattg ggaaaccttg tgcagtattg gggtctagag 
    2461 ctaaaaaaga gtgctatcag tctatttgac agctttgcaa taacagtagc tgaaggaaca 
    2521 gatagaatta tagaattggt aagaggaatt tgtagggcta tctaccatat acctagaaga 
    2581 ataagacagg gctttgaaac agctttgcta taa
//
last modified: Tue May 31 10:56 2022


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