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LOCUS	    DQ360193		     642 bp    DNA     linear	VRL 16-OCT-2009
DEFINITION  HIV-1 isolate 241gMa98 from Malawi gag protein (gag) gene, partial
	    cds
ACCESSION   DQ360193
VERSION     DQ360193.2 GI:261414190
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 588)
            Show all sequences for reference 1
  AUTHORS   McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
	    Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
	    Fine,P.E.
  TITLE     Emergence of a Three Codon Deletion in gag p17 in HIV Type 1
	    Subtype C Long-Term Survivors, and General Population Spread
  JOURNAL   AIDS Res. Hum. Retroviruses 22 (2), 195-201 (2006)
  PUBMED    16478403
REFERENCE   2 (bases 1 to 588)
            Show all sequences for reference 2
  AUTHORS   McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
	    Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
	    Fine,P.E.M.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-JAN-2006) Zoology, National University of Ireland
	    Galway, University Rd., Galway, Ireland
COMMENT     This sequence was revised in GenBank; HIVdb update 11/2010.
FEATURES             Location/Qualifiers
     source	     1..642
		     /organism="Human immunodeficiency virus 1"
		     /proviral
		     /mol_type="genomic DNA"
		     /isolate="241gMa98"
		     /db_xref="taxon:11676"
		     /country="Malawi"
		     /note="subtype: C"
     gene	     <1..>642
		     /gene="gag"
     CDS	     <1..>642
		     /gene="gag"
		     /note="p17p24"
		     /codon_start="1"
		     /transl_table="1"
		     /product="gag protein"
		     /protein_id="ABD49035.2"
		     /db_xref="GI:261414191"
		     /translation="FALDPGLLETSEGCKQILRQLHPALQTGTKELISLHNTVATLYC
		     VHEKIEVRDTKEALDKIEEEQNKSQQKTQQAEAADRGKVSQNYPIVQNIQGQMVHQPL
		     SPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTI
		     NEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPVPVG"
BASE COUNT	241 a	 136 c	  145 g    120 t
ORIGIN
       1 tttgcacttg accctggcct tttagagaca tcagaaggct gtaaacaaat actaagacag 
      61 ctacatccag ctcttcagac agggacaaag gaacttatat cattacataa tacagtagca 
     121 actctctatt gtgtacatga aaagatagag gtacgagaca ccaaggaagc cttagacaaa 
     181 atagaggaag aacaaaacaa aagtcagcaa aaaacacagc aggcagaagc ggctgacaga 
     241 ggaaaggtca gtcaaaatta tcctatagtg cagaatatcc aagggcaaat ggtacaccag 
     301 cccttatcac ctagaacttt gaatgcgtgg gtaaaggtaa tagaggagaa ggctttcagc 
     361 ccagaggtaa tacccatgtt tacagcatta tcagaaggag ccaccccaca agatttaaac 
     421 accatgttaa atacagtagg gggacatcaa gcagccatgc aaatgttaaa agataccatc 
     481 aatgaggagg ctgcagaatg ggacagatta catccagtgc atgcagggcc tgtcgcacca 
     541 ggccaaatga gagaaccaag gggaagtgac atagcaggaa ctactagtac ccttcaggaa 
     601 caaatagcat ggatgacaaa taacccacct gtcccagtag ga
//
last modified: Tue May 31 10:56 2022


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