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LOCUS DQ360193 642 bp DNA linear VRL 16-OCT-2009
DEFINITION HIV-1 isolate 241gMa98 from Malawi gag protein (gag) gene, partial
cds
ACCESSION DQ360193
VERSION DQ360193.2 GI:261414190
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 588)
Show all sequences for reference 1
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.
TITLE Emergence of a Three Codon Deletion in gag p17 in HIV Type 1
Subtype C Long-Term Survivors, and General Population Spread
JOURNAL AIDS Res. Hum. Retroviruses 22 (2), 195-201 (2006)
PUBMED 16478403
REFERENCE 2 (bases 1 to 588)
Show all sequences for reference 2
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.M.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2006) Zoology, National University of Ireland
Galway, University Rd., Galway, Ireland
COMMENT This sequence was revised in GenBank; HIVdb update 11/2010.
FEATURES Location/Qualifiers
source 1..642
/organism="Human immunodeficiency virus 1"
/proviral
/mol_type="genomic DNA"
/isolate="241gMa98"
/db_xref="taxon:11676"
/country="Malawi"
/note="subtype: C"
gene <1..>642
/gene="gag"
CDS <1..>642
/gene="gag"
/note="p17p24"
/codon_start="1"
/transl_table="1"
/product="gag protein"
/protein_id="ABD49035.2"
/db_xref="GI:261414191"
/translation="FALDPGLLETSEGCKQILRQLHPALQTGTKELISLHNTVATLYC
VHEKIEVRDTKEALDKIEEEQNKSQQKTQQAEAADRGKVSQNYPIVQNIQGQMVHQPL
SPRTLNAWVKVIEEKAFSPEVIPMFTALSEGATPQDLNTMLNTVGGHQAAMQMLKDTI
NEEAAEWDRLHPVHAGPVAPGQMREPRGSDIAGTTSTLQEQIAWMTNNPPVPVG"
BASE COUNT 241 a 136 c 145 g 120 t
ORIGIN
1 tttgcacttg accctggcct tttagagaca tcagaaggct gtaaacaaat actaagacag
61 ctacatccag ctcttcagac agggacaaag gaacttatat cattacataa tacagtagca
121 actctctatt gtgtacatga aaagatagag gtacgagaca ccaaggaagc cttagacaaa
181 atagaggaag aacaaaacaa aagtcagcaa aaaacacagc aggcagaagc ggctgacaga
241 ggaaaggtca gtcaaaatta tcctatagtg cagaatatcc aagggcaaat ggtacaccag
301 cccttatcac ctagaacttt gaatgcgtgg gtaaaggtaa tagaggagaa ggctttcagc
361 ccagaggtaa tacccatgtt tacagcatta tcagaaggag ccaccccaca agatttaaac
421 accatgttaa atacagtagg gggacatcaa gcagccatgc aaatgttaaa agataccatc
481 aatgaggagg ctgcagaatg ggacagatta catccagtgc atgcagggcc tgtcgcacca
541 ggccaaatga gagaaccaag gggaagtgac atagcaggaa ctactagtac ccttcaggaa
601 caaatagcat ggatgacaaa taacccacct gtcccagtag ga
//
last modified: Tue May 31 10:56 2022