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LOCUS DQ360177 408 bp DNA linear VRL 28-FEB-2006
DEFINITION HIV-1 isolate 3133eMa00 from Malawi envelope glycoprotein (env)
gene, partial cds
ACCESSION DQ360177
VERSION DQ360177.1 GI:88698351
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 408)
Show all sequences for reference 1
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.
TITLE Emergence of a Three Codon Deletion in gag p17 in HIV Type 1
Subtype C Long-Term Survivors, and General Population Spread
JOURNAL AIDS Res. Hum. Retroviruses 22 (2), 195-201 (2006)
PUBMED 16478403
REFERENCE 2 (bases 1 to 408)
Show all sequences for reference 2
AUTHORS McCormack,G.P., Glynn,J.R., Clewley,J.P., Crampin,A.C.,
Travers,S.A., Redmond,N., Keane,T.M., Sibande,F., Mulawa,D. and
Fine,P.E.M.
TITLE Direct Submission
JOURNAL Submitted (12-JAN-2006) Zoology, National University of Ireland
Galway, University Rd., Galway, Ireland
FEATURES Location/Qualifiers
source 1..408
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="3133eMa00"
/db_xref="taxon:11676"
/country="Malawi"
/note="subtype: C"
gene <1..>408
/gene="env"
CDS <1..>408
/gene="env"
/note="C2V3 region"
/codon_start="1"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="ABD49019.1"
/db_xref="GI:88698352"
/translation="HYCAPAGYAILKCKDNKFNGTGPCTNVSIVQCTHGIKPVVSTQL
LLNGSLAEGEIIIRSKNITDNAKTMIVHLNESVEIVCTRPNNNTRKSVRIGPGQTFYA
TGEIIGDIRQAHCNISEXZWNKTLQRVVEKLREH"
BASE COUNT 172 a 58 c 81 g 95 t 2 other
ORIGIN
1 cattattgtg ctccagctgg ttatgcgatt ctaaagtgta aagataataa attcaatgga
61 acaggaccat gcactaatgt cagcatagta caatgcacac atggaattaa gccagtggta
121 tcaactcaac tactgttaaa tggtagccta gcagaaggag agataataat tagatctaaa
181 aatataacag acaatgctaa aacaatgata gtacatctta atgaatctgt agagattgtg
241 tgtacaagac ccaacaataa tacaagaaaa agtgtgagga taggaccagg acaaacattc
301 tatgcaacag gagaaataat aggagatata agacaagcac attgtaacat tagtgaaayt
361 saatggaata aaactttaca aagggtagtg gaaaaattga gagaacac
//
last modified: Tue May 31 10:56 2022