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LOCUS DQ199587 1212 bp RNA linear VRL 31-DEC-2005
DEFINITION HIV-1 isolate 14 from USA pol protein (pol) gene, partial cds
ACCESSION DQ199587
VERSION DQ199587.1 GI:77737766
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 1212)
Show all sequences for reference 1
AUTHORS Gallant,J.E., Rodriguez,A.E., Weinberg,W.G., Young,B., Berger,D.S.,
Lim,M.L., Liao,Q., Ross,L., Johnson,J. and Shaefer,M.S.
TITLE Early virologic nonresponse to tenofovir, abacavir, and lamivudine
in HIV-infected antiretroviral-naive subjects.
JOURNAL J. Infect. Dis.. 192(11); 1921-30 (2005)
PUBMED 16267763
REFERENCE 2 (bases 1 to 1212)
Show all sequences for reference 2
AUTHORS Ross,L. and Li,J.
TITLE Direct Submission
JOURNAL Submitted (08-SEP-2005) International Clinical Virology,
GlaxoSmithKline, RC2 3234, 5 Moore Drive, Research Triangle Park,
NC 27709, USA
FEATURES Location/Qualifiers
source 1..1212
/organism="Human immunodeficiency virus 1"
/mol_type="genomic RNA"
/isolate="14"
/isolation_source="plasma from antiretroviral-naive
subject treated for 12 weeks with a regimen of tenofovir
plus abacavir/lamivudine and who met the definition of
virologic non-response in the unplanned interim analysis
of ESS30009"
/db_xref="taxon:11676"
/country="USA"
gene <1..>1212
/gene="pol"
CDS <1..>1212
/gene="pol"
/note="contains protease and reverse transcriptase"
/codon_start="1"
/transl_table="1"
/product="pol protein"
/protein_id="ABB01705.1"
/db_xref="GI:77737767"
/translation="PQITLWQRPLVTIKIGGQLKEALLDTGADDTVLEDINLPGKWKP
KMIGGIGGFIKVRQYDQVQVEICGHKAIGTVLVGPTPVNIIGRNLLTQIGCTLNFPIS
PIETVPVKLKPGMDGPKVKQWPLTEEKIKALVEICTEMEKEGKISKIGPDNPYNTPVF
AIKXKDSTKWRKLVDFRELNKRTQDFWEVQLGIPHPAGLKKKKSVTVLDVGDAYFSVP
LDKDFRKYTAFTIPSINNETPGIRYQYNVLPQGWKGSPAIFQASMTKILEPFRKQNPD
IVIYQYVDDLYVGSDLEIEQHRXKIEELRXHLXXWGFTTPDKKHQKEPPFLWMGYELH
PDKWTVQPIELPEKDIWTVNDIQKLVGKLNWASQIYAGIKVRQLCKLLRGTKALTEVV
PLTEEAELELAE"
BASE COUNT 473 a 199 c 254 g 277 t 9 other
ORIGIN
1 cctcagatca ctctttggca acgacccctc gtcacaataa arataggggg gcaactaaag
61 gaagctctat tagatacagg agcagatgac acagtattag aagacataaa tttaccaggg
121 aaatggaaac caaaaatgat aggaggaatt ggaggtttta tcaaagtaag acaatatgat
181 caagtacaag tagaaatctg tggacataaa gctataggta cagtattagt aggacctaca
241 cctgtcaaca taattggaag aaatctgttg actcagattg gttgcacttt aaattttccc
301 attagtccta ttgaaactgt accagtaaaa ttaaagccag gaatggatgg cccaaaagtt
361 aagcaatggc cattgacaga ggaaaaaata aaagcattgg tagaaatttg tacagaaatg
421 gaaaaggaag gaaaaatttc aaaaattggg cctgacaatc catayaatac tccagtattt
481 gctataaaga raaaagacag tactaaatgg agaaaattag tagatttcag agaacttaat
541 aagagaactc aagacttctg ggaagttcaa ttaggaatac cacatcccgc aggrctaaaa
601 aagaaaaaat cagtaacagt actggatgtg ggtgatgcat atttytcagt tcccctagat
661 aaagacttca ggaagtatac tgcattcacc atacctagta taaacaatga gacaccaggg
721 attagatacc agtacaatgt gcttccgcaa ggatggaaag gatcaccagc aatattccaa
781 gctagcatga caaaaatctt ggagcctttt agaaaacaaa atccagacat agttatctat
841 cagtacgtgg atgatttgta tgtaggatct gacttagaaa tagagcagca tagaakaaaa
901 atagaggaac tgagagawca tctgttwarg tggggattta ccacaccaga caaaaaacat
961 cagaaagaac ctccatttct ttggatgggt tatgaactcc atcctgataa atggacagta
1021 cagccaatag agctgccaga aaaagacatc tggactgtca atgatataca gaagttagtg
1081 ggaaaattga attgggcaag tcaaatttat gcagggatta aggtaaggca attatgcaaa
1141 ctccttaggg gaaccaaagc actaacagaa gtagtaccac taacagaaga agcagagcta
1201 gaattggcag aa
//
last modified: Tue May 31 10:56 2022