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LOCUS	    DQ136386		     699 bp    DNA     linear	VRL 25-MAY-2006
DEFINITION  HIV-1 isolate QA779 clone A from Kenya envelope glycoprotein (env)
	    gene, partial cds
ACCESSION   DQ136386
VERSION     DQ136386.1 GI:73334929
KEYWORDS    .
SOURCE	    Human immunodeficiency virus 1 (HIV-1)
  ORGANISM  Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
	    Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
	    group
REFERENCE   1 (bases 1 to 699)
            Show all sequences for reference 1
  AUTHORS   Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
  TITLE     Diversity in HIV-1 Envelope V1-V3 Sequences Early in Infection
	    Reflects Sequence Diversity Throughout the HIV-1 Genome But Does
	    Not Predict the Extent of Sequence Diversity During Chronic
	    Infection
  JOURNAL   AIDS Res. Hum. Retroviruses 22 (5), 430-437 (2006)
  PUBMED    16706620
REFERENCE   2 (bases 1 to 699)
            Show all sequences for reference 2
  AUTHORS   Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
  TITLE     Direct Submission
  JOURNAL   Submitted (19-JUL-2005) Division of Human Biology, Fred Hutchinson
	    Cancer Research Center, 1100 Fairview Avenue North C3-168, Seattle,
	    WA 98109, USA
REFERENCE   3
            Show all sequences for reference 3
  AUTHORS   Sagar,M., Wu,X., Lee,S. and Overbaugh,J.
  TITLE     Human immunodeficiency virus type 1 V1-V2 envelope loop sequences
	    expand and add glycosylation sites over the course of infection,
	    and these modifications affect antibody neutralization sensitivity.
  JOURNAL   J. Virol. 80 (19), 9586-98 (2006)
  PUBMED    16973562
FEATURES             Location/Qualifiers
     source	     1..699
		     /organism="Human immunodeficiency virus 1"
		     /proviral="Human immunodeficiency virus 1"
		     /mol_type="genomic DNA"
		     /isolate="QA779"
		     /isolation_source="peripheral blood monomuclear cells 1105
		     days after infection"
		     /db_xref="taxon:11676"
		     /clone="A"
		     /country="Kenya"
     gene	     <1..>699
		     /gene="env"
     CDS	     <1..>699
		     /gene="env"
		     /note="V1-C3"
		     /codon_start="2"
		     /transl_table="1"
		     /product="envelope glycoprotein"
		     /protein_id="AAZ74858.1"
		     /db_xref="GI:73334930"
		     /translation="LTGSTVTNSSEEIKNCTYDMTTELRDKKQKVYSLFYKLDVVQIN
		     ESENSNDTQYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCNDKEFSGTGSC
		     KNVSSVQCTHGIRPVASTQLLLNGSLAEGNIMIRSENITDNAKNIIVQFNESVQINCI
		     RPNNNTRKSIRFGPGQAFYTNDIIGDIRQAHCNINWTKWNDTLQKVAEQLKKHFPNKT
		     INFTNPSGGDLEITT"
BASE COUNT	274 a	 122 c	  127 g    176 t
ORIGIN
       1 tttaactggt agcactgtca ccaatagcag tgaagaaata aaaaactgca cttacgatat 
      61 gaccacagaa ctaagagata agaaacagaa agtctattca ctgttttata aacttgatgt 
     121 agtacaaatt aatgaaagtg agaacagtaa tgatacacag tatagactga taaattgtaa 
     181 tacctcagcc atcacacagg cttgcccgaa ggtctctttt gagccaattc ctatacatta 
     241 ttgtgcccca gctggttttg cgattctaaa gtgtaatgat aaggaattca gtggaacagg 
     301 gtcgtgtaaa aatgttagtt cagtacaatg tacacatgga attaggccag tggcatcaac 
     361 tcagctgcta ctgaatggca gtctagcaga aggaaacata atgattagat ctgaaaatat 
     421 tacagataat gccaaaaaca taatagtaca gtttaatgag tctgtacaaa ttaattgtat 
     481 cagacccaac aacaatacaa gaaaaagtat acgctttgga ccaggacaag ccttctatac 
     541 aaatgacata ataggggata taagacaagc acattgtaat atcaactgga caaaatggaa 
     601 tgacacttta caaaaggtag ctgaacagtt aaagaaacat ttccctaata aaacaataaa 
     661 ctttactaac ccctcaggag gggatctaga aattacaac
//
last modified: Tue May 31 10:56 2022


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