View NCBI entry Download GenBank file Graphics View Download GFF3 File
LOCUS DQ136386 699 bp DNA linear VRL 25-MAY-2006
DEFINITION HIV-1 isolate QA779 clone A from Kenya envelope glycoprotein (env)
gene, partial cds
ACCESSION DQ136386
VERSION DQ136386.1 GI:73334929
KEYWORDS .
SOURCE Human immunodeficiency virus 1 (HIV-1)
ORGANISM Human immunodeficiency virus 1 Viruses; Retro-transcribing viruses;
Retroviridae; Orthoretrovirinae; Lentivirus; Primate lentivirus
group
REFERENCE 1 (bases 1 to 699)
Show all sequences for reference 1
AUTHORS Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
TITLE Diversity in HIV-1 Envelope V1-V3 Sequences Early in Infection
Reflects Sequence Diversity Throughout the HIV-1 Genome But Does
Not Predict the Extent of Sequence Diversity During Chronic
Infection
JOURNAL AIDS Res. Hum. Retroviruses 22 (5), 430-437 (2006)
PUBMED 16706620
REFERENCE 2 (bases 1 to 699)
Show all sequences for reference 2
AUTHORS Sagar,M., Kirkegaard,E., Lavreys,L. and Overbaugh,J.
TITLE Direct Submission
JOURNAL Submitted (19-JUL-2005) Division of Human Biology, Fred Hutchinson
Cancer Research Center, 1100 Fairview Avenue North C3-168, Seattle,
WA 98109, USA
REFERENCE 3
Show all sequences for reference 3
AUTHORS Sagar,M., Wu,X., Lee,S. and Overbaugh,J.
TITLE Human immunodeficiency virus type 1 V1-V2 envelope loop sequences
expand and add glycosylation sites over the course of infection,
and these modifications affect antibody neutralization sensitivity.
JOURNAL J. Virol. 80 (19), 9586-98 (2006)
PUBMED 16973562
FEATURES Location/Qualifiers
source 1..699
/organism="Human immunodeficiency virus 1"
/proviral="Human immunodeficiency virus 1"
/mol_type="genomic DNA"
/isolate="QA779"
/isolation_source="peripheral blood monomuclear cells 1105
days after infection"
/db_xref="taxon:11676"
/clone="A"
/country="Kenya"
gene <1..>699
/gene="env"
CDS <1..>699
/gene="env"
/note="V1-C3"
/codon_start="2"
/transl_table="1"
/product="envelope glycoprotein"
/protein_id="AAZ74858.1"
/db_xref="GI:73334930"
/translation="LTGSTVTNSSEEIKNCTYDMTTELRDKKQKVYSLFYKLDVVQIN
ESENSNDTQYRLINCNTSAITQACPKVSFEPIPIHYCAPAGFAILKCNDKEFSGTGSC
KNVSSVQCTHGIRPVASTQLLLNGSLAEGNIMIRSENITDNAKNIIVQFNESVQINCI
RPNNNTRKSIRFGPGQAFYTNDIIGDIRQAHCNINWTKWNDTLQKVAEQLKKHFPNKT
INFTNPSGGDLEITT"
BASE COUNT 274 a 122 c 127 g 176 t
ORIGIN
1 tttaactggt agcactgtca ccaatagcag tgaagaaata aaaaactgca cttacgatat
61 gaccacagaa ctaagagata agaaacagaa agtctattca ctgttttata aacttgatgt
121 agtacaaatt aatgaaagtg agaacagtaa tgatacacag tatagactga taaattgtaa
181 tacctcagcc atcacacagg cttgcccgaa ggtctctttt gagccaattc ctatacatta
241 ttgtgcccca gctggttttg cgattctaaa gtgtaatgat aaggaattca gtggaacagg
301 gtcgtgtaaa aatgttagtt cagtacaatg tacacatgga attaggccag tggcatcaac
361 tcagctgcta ctgaatggca gtctagcaga aggaaacata atgattagat ctgaaaatat
421 tacagataat gccaaaaaca taatagtaca gtttaatgag tctgtacaaa ttaattgtat
481 cagacccaac aacaatacaa gaaaaagtat acgctttgga ccaggacaag ccttctatac
541 aaatgacata ataggggata taagacaagc acattgtaat atcaactgga caaaatggaa
601 tgacacttta caaaaggtag ctgaacagtt aaagaaacat ttccctaata aaacaataaa
661 ctttactaac ccctcaggag gggatctaga aattacaac
//
last modified: Tue May 31 10:56 2022